CX069623

Overview
NameCX069623
Unique NameCX069623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069623_ssr782 microsatellite CX069623_ssr782:782..793. BLAST: Citrus ESTs to TAIR9
Csv1_Contig3982 contig Csv1_Contig3982:1..888. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NDUS2_NICSY (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.953e-21
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  416 MTTRNGQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPL 577
            MTT+N QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQ GT+ L
Sbjct:    1 MTTKNRQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQRGTEKL 54          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NDUS2_ARATH (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Arabidopsis thaliana GN=NAD7 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.160e-18
Identity = 45/54 (83.33%), Postives = 46/54 (85.19%), Query Frame = 2
Query:  416 MTTRNGQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPL 577
            MTTR  QIKNFT NFGPQHPAAHGV R VLEMNGEVVERAEPHIGLL  GT+ L
Sbjct:    1 MTTRKRQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKL 54          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NDUS2_SOLTU (NADH-ubiquinone oxidoreductase 49 kDa subunit (Fragment) OS=Solanum tuberosum GN=NAD7 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.982e-16
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 2
Query:  416 MTTRNGQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLL 556
            MTT+N QI+NFT NFGPQHPAAHGV R VLEMNGEVVERAEPHIGLL
Sbjct:    1 MTTKNRQIQNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLL 47          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_RHOCA (NADH-quinone oxidoreductase subunit D OS=Rhodobacter capsulatus GN=nuoD PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 2
Query:  422 TRNGQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            T    I+NF  NFGPQHPAAHGV R VLE++GE+VERA+PHIGLL  GT+ L  SR
Sbjct:   19 TGEQSIRNFNINFGPQHPAAHGVLRMVLELDGEIVERADPHIGLLHRGTEKLMESR 74          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_PARDP (NADH-quinone oxidoreductase subunit D OS=Paracoccus denitrificans (strain Pd 1222) GN=nuoD PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 2
Query:  422 TRNGQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            T    I+NF  NFGPQHPAAHGV R VLE++GE+VERA+PHIGLL  GT+ L  SR
Sbjct:   19 TGEQSIRNFNINFGPQHPAAHGVLRMVLELDGEIVERADPHIGLLHRGTEKLMESR 74          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_LEPCP (NADH-quinone oxidoreductase subunit D OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=nuoD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  434 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            +IKN+T NFGPQHPAAHGV R VLE++GEV++RA+PHIGLL  GT+ L  S+
Sbjct:    3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAESK 54          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NDUS2_RECAM (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Reclinomonas americana GN=NAD7 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 2
Query:  434 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPL 577
            ++KNFT NFGPQHPAAHGV R VLE+NGEVV RA+PHIGLL  GT+ L
Sbjct:    9 KLKNFTMNFGPQHPAAHGVLRLVLELNGEVVNRADPHIGLLHRGTEKL 56          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NDUS2_PYLLI (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Pylaiella littoralis GN=NAD7 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 2
Query:  428 NGQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            N ++K+FT NFGPQHPAAHGV R +LE+NGEVV+RA+PHIGLL  GT+ L  ++
Sbjct:    9 NKKLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAK 62          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NDUS2_NEPOL (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Nephroselmis olivacea GN=NAD7 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 2
Query:  434 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPL 577
            ++KNFT NFGPQHPAAHGV R VLE+NGEVV RA+PHIGLL  GT+ L
Sbjct:   11 KVKNFTLNFGPQHPAAHGVLRLVLELNGEVVARADPHIGLLHRGTEKL 58          
BLAST of CX069623 vs. ExPASy Swiss-Prot
Match: NUOD_VESOH (NADH-quinone oxidoreductase subunit D OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=nuoD PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.205e-14
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  434 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 589
            +I+N+T NFGPQHPAAHGV R +LE++GEV+ERA+PHIGLL  GT+ L  S+
Sbjct:    3 EIRNYTLNFGPQHPAAHGVLRLILEIDGEVIERADPHIGLLHRGTEKLVESK 54          
The following BLAST results are available for this feature:
BLAST of CX069623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
NDUS2_NICSY5.953e-2190.74NADH-ubiquinone oxidoreductase 49 kDa subunit OS=N... [more]
NDUS2_ARATH6.160e-1883.33NADH-ubiquinone oxidoreductase 49 kDa subunit OS=A... [more]
NDUS2_SOLTU1.982e-1687.23NADH-ubiquinone oxidoreductase 49 kDa subunit (Fra... [more]
NUOD_RHOCA5.397e-1466.07NADH-quinone oxidoreductase subunit D OS=Rhodobact... [more]
NUOD_PARDP5.397e-1466.07NADH-quinone oxidoreductase subunit D OS=Paracoccu... [more]
NUOD_LEPCP5.397e-1467.31NADH-quinone oxidoreductase subunit D OS=Leptothri... [more]
NDUS2_RECAM5.397e-1475.00NADH-ubiquinone oxidoreductase 49 kDa subunit OS=R... [more]
NDUS2_PYLLI5.397e-1464.81NADH-ubiquinone oxidoreductase 49 kDa subunit OS=P... [more]
NDUS2_NEPOL7.048e-1475.00NADH-ubiquinone oxidoreductase 49 kDa subunit OS=N... [more]
NUOD_VESOH9.205e-1465.38NADH-quinone oxidoreductase subunit D OS=Vesicomyo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11G07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11G07-N13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069623 ID=CX069623; Name=CX069623; organism=Citrus sinensis; type=EST; length=888bp
AGGGGGAACCGCTCGCCCAGGGGCCCAGGGCTTTAACCACGCACCGGACC
CAAGGGATAGCATTCTCCATGCTATTCATACAAGGTTCGGGGAAAACCTG
AATAACCTTCTCTCGAAGGTAGGCGTGCCAGCTCCAGATAACTGGACGCC
TACCGAACTCGCCGCGCAAGTCATAGACGCGGAGGGGAACGCCCTCTATG
CCTTCGAGGCCAGCCTTCGAGAATTTGTTAACCCATCAGGTTCACAGTCC
CTACTTTATCTATGCGACTGAACTAATCAGTCTTATGATGGGCTCTTAAT
GCAGGCAAGGCGGTAGAGCTATCGCGCGCGGGCGAAGGAGATGCATTTCT
GGTACTGGTAGTACTGGACAAGCTCTCAGGGAATAATCTCTTTCTTATTT
CTGCCTTTCTTTCCCATGACGACTAGGAACGGGCAAATCAAAAATTTCAC
TTCGAATTTCGGACCTCAACATCCTGCTGCTCATGGTGTTTCACGATCAG
TATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCACATATTGGA
TTACTCCAGTGCGGCACGAAGCCGCTGACGCCGAGTCGGCTCCTATGCCG
CTAGCTATGCCCTGCTTGGTCCCCCGGCACGGTGGAGGTTCCGTAGCGCG
TCATGAGCACCGGGCTAAGGGGCGGTTGAGCAACTCAAGCGAACCGCCCT
ACCTTACTACAACATAGGGACAGAAGGGAGAAGGTTGTGAAGGTGGCCTC
GTTATCCACACCTCCGGTCGGATGAATGGAGGACCGACCGACCCGGGTTT
TCATGAGCGTTGGCGGGTCCTGGAGTGCCTGTCAAGGGCGCTAGCGCATA
CCCCGGGGTGATCATCACCACCTGCACCTCACATCTCG
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