DR403938

Overview
NameDR403938
Unique NameDR403938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9752 contig Csv1_Contig9752:160..614. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_ARATH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 4.771e-79
Identity = 141/150 (94.00%), Postives = 146/150 (97.33%), Query Frame = 2 
Query:    5 WSSLALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGA 454
            WS++A SMT+RPMKGML GPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEK GI VIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQD+TQIHTHMCYS+FNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGA
Sbjct:  542 WSAMAQSMTSRPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGA 691
[Close]
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_MESCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 1.063e-78
Identity = 143/150 (95.33%), Postives = 145/150 (96.67%), Query Frame = 2 
Query:    5 WSSLALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGA 454
            WSS+A SMTARPMKGML GPVTILNWSFVRNDQPRHETCYQIALAIK+EVEDLEKAGINVIQIDEAALREGLPLRKSEH FYL WAVHSFRITN GVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGA
Sbjct:  542 WSSMAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKNEVEDLEKAGINVIQIDEAALREGLPLRKSEHDFYLKWAVHSFRITNVGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGA 691
[Close]
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_SOLSC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2)

HSP 1 Score: 286.574 bits (732), Expect = 3.419e-77
Identity = 141/150 (94.00%), Postives = 143/150 (95.33%), Query Frame = 2 
Query:    5 WSSLALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGA 454
            WS+ A SMT RPMKGML GPVTILNWSFVRNDQPR ETCYQIALAIKDEVEDLEKAGI VIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITN GVQDTTQIHTHMCYSNFNDIIHSII+MDADVITIENSRSDEKLLSVFREGVKYGA
Sbjct:  541 WSTAAQSMTQRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNVGVQDTTQIHTHMCYSNFNDIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGA 690
[Close]
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_CATRO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 1.100e-75
Identity = 138/150 (92.00%), Postives = 141/150 (94.00%), Query Frame = 2 
Query:    5 WSSLALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGA 454
            WS  A SMT RPMKGML GPVTILNWSFVRNDQPR ETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRK+EHAFYLDWAVHSFRITN  +QDTTQIHTHMCYSNFNDIIHSIIDMDADV+TIENSRS EKLLSVFREGVKYGA
Sbjct:  542 WSQTAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKAEHAFYLDWAVHSFRITNLPLQDTTQIHTHMCYSNFNDIIHSIIDMDADVMTIENSRSSEKLLSVFREGVKYGA 691
[Close]
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_BURS3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia sp. (strain 383) GN=metE PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 6.275e-55
Identity = 107/148 (72.30%), Postives = 121/148 (81.76%), Query Frame = 2 
Query:    5 WSSLALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKY 448
            W + A S+T +PMKGML GPVTILNWSFVR+DQPR  +CYQ+ALAI++EV DLEKAG+ VIQIDEAALREGLPLR+++   YL WAV SFRIT  GVQD TQIHTHMCYS FNDII SI DMDADVITIE SRSD +LL  F +  KY
Sbjct:  545 WITYAQSLTNKPMKGMLTGPVTILNWSFVRDDQPRSVSCYQLALAIREEVLDLEKAGVRVIQIDEAALREGLPLRRAQWGEYLKWAVESFRITANGVQDDTQIHTHMCYSEFNDIIASIADMDADVITIETSRSDMELLDAF-DNFKY 691
[Close]
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_BURCM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=metE PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 6.275e-55
Identity = 105/142 (73.94%), Postives = 118/142 (83.10%), Query Frame = 2 
Query:    5 WSSLALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 430
            W + A S+T +PMKGML GPVTILNWSFVR+DQPR  +CYQ+ALAI+DEV DLEKAG+ VIQIDEAALREGLPLR+++   YL WAV +FRIT  GVQD TQIHTHMCYS FNDII SI DMDADVITIE SRSD +LL  F
Sbjct:  545 WITYAQSLTNKPMKGMLTGPVTILNWSFVRDDQPRSVSCYQLALAIRDEVLDLEKAGVRVIQIDEAALREGLPLRRAQWGEYLKWAVEAFRITANGVQDDTQIHTHMCYSEFNDIIASIADMDADVITIETSRSDMELLDAF 686
[Close]
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_BURCJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=metE PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 6.275e-55
Identity = 105/142 (73.94%), Postives = 119/142 (83.80%), Query Frame = 2 
Query:    5 WSSLALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 430
            W + A S+T +PMKGML GPVTILNWSFVR+DQPR  +CYQ+ALAI+DEV DLE+AG+ VIQIDEAALREGLPLR+++ + YL WAV SFRIT  GVQD TQIHTHMCYS FNDII SI DMDADVITIE SRSD +LL  F
Sbjct:  545 WITYAQSLTNKPMKGMLTGPVTILNWSFVRDDQPRSVSCYQLALAIRDEVLDLEQAGVRVIQIDEAALREGLPLRRAQWSEYLKWAVESFRITANGVQDDTQIHTHMCYSEFNDIIASIADMDADVITIETSRSDMELLDAF 686
[Close]
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_BURCH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain HI2424) GN=metE PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 6.275e-55
Identity = 105/142 (73.94%), Postives = 119/142 (83.80%), Query Frame = 2 
Query:    5 WSSLALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 430
            W + A S+T +PMKGML GPVTILNWSFVR+DQPR  +CYQ+ALAI++EV DLEKAG+ VIQIDEAALREGLPLR+++ + YL WAV SFRIT  GVQD TQIHTHMCYS FNDII SI DMDADVITIE SRSD +LL  F
Sbjct:  545 WIAYAQSLTRKPMKGMLTGPVTILNWSFVRDDQPRAVSCYQLALAIREEVLDLEKAGVRVIQIDEAALREGLPLRRAQWSEYLKWAVESFRITANGVQDDTQIHTHMCYSEFNDIIASIADMDADVITIETSRSDMELLDAF 686
[Close]
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_BURCC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=metE PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 6.275e-55
Identity = 105/142 (73.94%), Postives = 119/142 (83.80%), Query Frame = 2 
Query:    5 WSSLALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 430
            W + A S+T +PMKGML GPVTILNWSFVR+DQPR  +CYQ+ALAI++EV DLEKAG+ VIQIDEAALREGLPLR+++ + YL WAV SFRIT  GVQD TQIHTHMCYS FNDII SI DMDADVITIE SRSD +LL  F
Sbjct:  545 WIAYAQSLTRKPMKGMLTGPVTILNWSFVRDDQPRAVSCYQLALAIREEVLDLEKAGVRVIQIDEAALREGLPLRRAQWSEYLKWAVESFRITANGVQDDTQIHTHMCYSEFNDIIASIADMDADVITIETSRSDMELLDAF 686
[Close]
BLAST of DR403938 vs. ExPASy Swiss-Prot
Match: METE_BURCA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain AU 1054) GN=metE PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 6.275e-55
Identity = 105/142 (73.94%), Postives = 119/142 (83.80%), Query Frame = 2 
Query:    5 WSSLALSMTARPMKGMLXGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 430
            W + A S+T +PMKGML GPVTILNWSFVR+DQPR  +CYQ+ALAI++EV DLEKAG+ VIQIDEAALREGLPLR+++ + YL WAV SFRIT  GVQD TQIHTHMCYS FNDII SI DMDADVITIE SRSD +LL  F
Sbjct:  545 WIAYAQSLTRKPMKGMLTGPVTILNWSFVRDDQPRAVSCYQLALAIREEVLDLEKAGVRVIQIDEAALREGLPLRRAQWSEYLKWAVESFRITANGVQDDTQIHTHMCYSEFNDIIASIADMDADVITIETSRSDMELLDAF 686
The following BLAST results are available for this feature:
BLAST of DR403938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_ARATH4.771e-7994.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESCR1.063e-7895.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SOLSC3.419e-7794.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CATRO1.100e-7592.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURS36.275e-5572.305-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCM6.275e-5573.945-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCJ6.275e-5573.945-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCH6.275e-5573.945-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCC6.275e-5573.945-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCA6.275e-5573.945-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246M02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246M02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403938 ID=DR403938; Name=DR403938; organism=Citrus sinensis; type=EST; length=455bp
GGGCTGGTCCTCCTTGGCTCTGAGCATGACTGCTCGCCCAATGAAGGGAA
TGCTTNNTGGCCCTGTCACCATTCTCAACTGGTCCTTTGTCAGAAATGAC
CAGCCCAGACATGAAACCTGCTACCAGATTGCTTTGGCCATCAAGGACGA
AGTCGAGGATCTTGAGAAGGCAGGCATTAACGTTATTCAAATTGATGAGG
CTGCCTTGAGGGAAGGATTGCCTCTTAGGAAATCTGAGCATGCTTTCTAC
TTGGACTGGGCAGTCCACTCCTTCAGAATCACCAACTGTGGTGTCCAGGA
CACTACCCAGATCCACACCCACATGTGCTACTCCAACTTCAACGACATTA
TCCACTCAATTATCGACATGGATGCTGATGTGATCACCATTGAGAACTCT
CGTTCTGATGAGAAGCTCCTGTCTGTCTTCCGTGAGGGAGTCAAGTATGG
TGCTG
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