CX069612

Overview
NameCX069612
Unique NameCX069612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX069612 vs. ExPASy Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.470e-18
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 2 
Query:  257 LQVEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 394
            L +EEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP NR+F
Sbjct:  172 LSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217
[Close]
BLAST of CX069612 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.599e-17
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 2 
Query:  257 LQVEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 394
            L +EEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP  RIF
Sbjct:  171 LSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
[Close]
BLAST of CX069612 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.138e-17
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 2 
Query:  257 LQVEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 394
            L +EEKQ+FQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP  RIF
Sbjct:  171 LSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
The following BLAST results are available for this feature:
BLAST of CX069612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
R10A3_ARATH9.470e-1891.3060S ribosomal protein L10a-3 OS=Arabidopsis thalia... [more]
R10A1_ARATH3.599e-1791.3060S ribosomal protein L10a-1 OS=Arabidopsis thalia... [more]
R10A2_ARATH6.138e-1789.1360S ribosomal protein L10a-2 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_11F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11F09-L17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069612 ID=CX069612; Name=CX069612; organism=Citrus sinensis; type=EST; length=617bp
TTTTTTATAAAATATCAACGTATAAAAATTAAAAGGAAAAAAAAAACTCC
CTTTCGAACGTTTTCTCGGCCTCCAGATTCTGTTAGATTTTCTGCCCTTA
ATTAATTAGAACTTAAGAAATAATAATAACTGTACAAATGCCATCAAGCT
TATTAAGATTACAACAACATTCTTAACTAACCATCAATCATCAGCTAAAC
CCATATTGCATGAATCACACGAAGCACAGGTAGCAAAAATGGCACTGTTG
TGGCAACTCCAAGTCGAAGAGAAGCAGATCTTCCAGAATGTTCAAATGAG
TGTTAACTTCCTTGTCTCATTGTTGAAGAAAAACTGGCAGAATGTCAGGT
GCCTCTATCTGAAGAGTACCATGGGTCCTTCAAACCGCATCTTTTAAGAA
ATTCTGCTTTATGTTGGAGTTTTGTAGGGAAAACCTAGTGTGATCTTATT
ATACCCAAAATGTCTTTCTTTGAATGGTCACAACCTGCAATTTTCTTTTT
CTTTTTCTTTTTCTTTTCTGAATTTAATGCACTAGTAATCTTATAATATG
GTAGACTTGTACGAATTTTTTTGTTGGAGAGATGTTGAATTGAATCATGA
TTGCTTTCTGTTAACCT
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