DR403934

Overview
NameDR403934
Unique NameDR403934
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10901 contig Csv1_Contig10901:1116..1634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403934 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 2.539e-39
Identity = 80/102 (78.43%), Postives = 82/102 (80.39%), Query Frame = 1
Query:   10 VPXPNVSXXXXVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 315
            VP PNVS    VVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVS+DFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN W+
Sbjct:  300 VPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 401          
BLAST of DR403934 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 1.260e-38
Identity = 79/102 (77.45%), Postives = 81/102 (79.41%), Query Frame = 1
Query:   10 VPXPNVSXXXXVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 315
            VP PNVS    VVQVSKKTFAEEVNAAFR+SA+ ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  295 VPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 396          
BLAST of DR403934 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.149e-38
Identity = 79/102 (77.45%), Postives = 80/102 (78.43%), Query Frame = 1
Query:   10 VPXPNVSXXXXVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 315
            VP PNVS    VVQVSKKTFAEEVNAAFRE+AD ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN WK
Sbjct:  291 VPTPNVSVVDLVVQVSKKTFAEEVNAAFREAADKELKGILDVCDEPLVSVDFRCSDVSSTVDASLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK 392          
BLAST of DR403934 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.807e-38
Identity = 78/102 (76.47%), Postives = 81/102 (79.41%), Query Frame = 1
Query:   10 VPXPNVSXXXXVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 315
            VP PNVS    VVQVSKKTFAEEVNAAFR++A+ ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  132 VPTPNVSVVDLVVQVSKKTFAEEVNAAFRDAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 233          
BLAST of DR403934 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.376e-37
Identity = 78/102 (76.47%), Postives = 79/102 (77.45%), Query Frame = 1
Query:   10 VPXPNVSXXXXVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 315
            VP PNVS    VVQVSKKTFAEEVN AFRESA  EL GILSVCDEPLVSVDFRC              MGDD+VKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  304 VPTPNVSVVDLVVQVSKKTFAEEVNEAFRESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDLADIVANNWK 405          
BLAST of DR403934 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.194e-34
Identity = 72/102 (70.59%), Postives = 75/102 (73.53%), Query Frame = 1
Query:   10 VPXPNVSXXXXVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 315
            VP PNVS    VVQVSKKT AEEVN AFR++A NEL GIL VCD PLVSVDFRC              MGDDMVKVI+WYDNEWGYSQRVVDLADI AN WK
Sbjct:  302 VPTPNVSVVDLVVQVSKKTLAEEVNQAFRDAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYSQRVVDLADICANQWK 403          
BLAST of DR403934 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.127e-32
Identity = 68/102 (66.67%), Postives = 76/102 (74.51%), Query Frame = 1
Query:   10 VPXPNVSXXXXVVQVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 312
            VP PNVS    VV V+KK   AE+VNAAFR++AD  LKG+L+VCDEPLVSVDFRC              MGDDMVKV+AWYDNEWGYSQRVVDLA +VANNW
Sbjct:  290 VPTPNVSVVDLVVNVAKKGITAEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANNW 391          
BLAST of DR403934 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.154e-30
Identity = 63/101 (62.38%), Postives = 72/101 (71.29%), Query Frame = 1
Query:   10 VPXPNVSXXXXVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 312
            VP P VS    VVQV KKTFAEEVNAAFRE+A+  +KG+L V D PLVS+DF+C              MGDDMVKV+AWYDNEWGYSQRVVDLA++ A  W
Sbjct:  272 VPTPTVSVVDLVVQVEKKTFAEEVNAAFREAANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAEVTAKKW 372          
BLAST of DR403934 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 4.799e-30
Identity = 66/102 (64.71%), Postives = 73/102 (71.57%), Query Frame = 1
Query:   10 VPXPNVSXXXXVVQVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 312
            VP PNVS    VV V+KK   AE+VNAAFR++A+  LKGIL VCD PLVSVDFRC              MGDDMVKV+AWYDNEWGYSQRVVDLA +VAN W
Sbjct:  321 VPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKW 422          
BLAST of DR403934 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.016e-28
Identity = 62/102 (60.78%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   10 VPXPNVSXXXXVVQVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 312
            VP PNVS    V+ V KK   AE+VN AFR++A+  +KGIL VCD PLVSVDFRC              MGDDMVKV+AWYDNEWGYSQRVVDLA +VA+ W
Sbjct:  317 VPTPNVSVVDLVINVEKKGLTAEDVNEAFRKAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKW 418          
The following BLAST results are available for this feature:
BLAST of DR403934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
G3PA_SPIOL2.539e-3978.43Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH1.260e-3877.45Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC2.149e-3877.45Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SINAL2.807e-3876.47Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA2.376e-3776.47Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE4.194e-3470.59Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_TOBAC5.127e-3266.67Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_CHLRE2.154e-3062.38Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_PEA4.799e-3064.71Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH2.016e-2860.78Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246L22 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246L22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403934 ID=DR403934; Name=DR403934; organism=Citrus sinensis; type=EST; length=542bp
CGGGCCGGGGTGCCNNNACCAAACGTCTCGGNNNNTNNNNTTGTCGTTCA
GGTGTCCAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCCTTCAGAGAAA
GCGCTGACAATGAGCTGAAAGGCATCCTCTCCGTGTGCGACGAGCCCCTT
GTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATC
TCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATGGTATG
ACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTT
GCCAACAACTGGAAGTGAAGTAAATACTAAATCGGAACTCGGCTGTAATC
GGCACAACGATGTTCTTGTTTTTCATTTTTGGTTCCCCCATTTATTGTTC
TGCGTCTTAGAATTTGTATTTTTGACAAGAATGTATAACACTATCTTATT
GTGGAACCTTTTTCCTTTGCCTGTCATTAATCAATATGCAATAAAATTCT
TACATTAAAGTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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