CX069592

Overview
NameCX069592
Unique NameCX069592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1643 contig Csv1_Contig1643:722..1627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069592 vs. ExPASy Swiss-Prot
Match: PSD11_MOUSE (26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus GN=Psmd11 PE=1 SV=3)

HSP 1 Score: 259.996 bits (663), Expect = 1.352e-68
Identity = 131/230 (56.96%), Postives = 170/230 (73.91%), Query Frame = -2
Query:  219 AARTAANAIYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYXXXXXXXFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKI 905
            +ART ANAIY PP  Q T+D+QSGI+HA EEKD+KTAYSY       +++++ P+A+ SLKYMLLCKIM++  +DV  ++S K  L+Y G + +A+K VA A   RSL  FE AL D++A+L +DPI+  HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L    VE+KLSQMILDKKF G LDQG G LIIF++P  D  Y A LETI NM KVVDSL+ ++ K+
Sbjct:  192 SARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYSKAKKL 421          
BLAST of CX069592 vs. ExPASy Swiss-Prot
Match: PSD11_HUMAN (26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3)

HSP 1 Score: 259.61 bits (662), Expect = 1.765e-68
Identity = 131/230 (56.96%), Postives = 170/230 (73.91%), Query Frame = -2
Query:  219 AARTAANAIYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYXXXXXXXFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKI 905
            +ART ANAIY PP  Q T+D+QSGI+HA EEKD+KTAYSY       +++++ P+A+ SLKYMLLCKIM++  +DV  ++S K  L+Y G + +A+K VA A   RSL  FE AL D++A+L +DPI+  HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L    VE+KLSQMILDKKF G LDQG G LIIF++P  D  Y A LETI NM KVVDSL+ ++ K+
Sbjct:  192 SARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKL 421          
BLAST of CX069592 vs. ExPASy Swiss-Prot
Match: PSD11_BOVIN (26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus GN=PSMD11 PE=2 SV=3)

HSP 1 Score: 259.61 bits (662), Expect = 1.765e-68
Identity = 131/230 (56.96%), Postives = 170/230 (73.91%), Query Frame = -2
Query:  219 AARTAANAIYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYXXXXXXXFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKI 905
            +ART ANAIY PP  Q T+D+QSGI+HA EEKD+KTAYSY       +++++ P+A+ SLKYMLLCKIM++  +DV  ++S K  L+Y G + +A+K VA A   RSL  FE AL D++A+L +DPI+  HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L    VE+KLSQMILDKKF G LDQG G LIIF++P  D  Y A LETI NM KVVDSL+ ++ K+
Sbjct:  192 SARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKL 421          
BLAST of CX069592 vs. ExPASy Swiss-Prot
Match: PSD11_DICDI (26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium discoideum GN=psmD11 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 8.761e-68
Identity = 125/230 (54.35%), Postives = 172/230 (74.78%), Query Frame = -2
Query:  219 AARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPE-LDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKI 905
            +ART AN IY PP  Q  ID+QSGILH+EEKDYKTA+SY       +++LEDP A+ +LKYMLLCKIM +Q DDV  +++ K GL+Y     ++A+  ++ +H+KRSL +F+   ++F  QL +DPI+H HL+ LY  LLEQNLCR+IEP+SRVEI+HIA+LI+LP+D VE+KLS MILDKK+ G LDQG G LI+FE+ K D ++  +LETI  + +VVD L+ ++ K+
Sbjct:  183 SARTNANTIYCPPKLQAEIDMQSGILHSEEKDYKTAFSYFFESYETYDSLEDPFAMKALKYMLLCKIMTNQTDDVHALVNGKIGLKYHNNRSIEAITQISKSHAKRSLHMFQEVTKEFSDQLSDDPIIHSHLTELYSNLLEQNLCRIIEPFSRVEISHIAKLIDLPVDVVERKLSLMILDKKYNGILDQGTGTLIVFEEQKEDKLFNCSLETIGALSRVVDLLYEKTNKL 412          
BLAST of CX069592 vs. ExPASy Swiss-Prot
Match: RPN6_SCHPO (Probable 26S proteasome regulatory subunit rpn6 OS=Schizosaccharomyces pombe GN=rpn6 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.827e-65
Identity = 126/231 (54.55%), Postives = 166/231 (71.86%), Query Frame = -2
Query:  216 AARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXFNALEDPR-AVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKIM 905
            AA+T+ANA+Y PP  QG +DLQSGILHA++ D+KTAYSY       F +L+D + A+ SLKYMLL +IM++   +V  +++ K  ++Y G +++AM+A+A AH  RSL  FE AL+D+K +L  DPI+  HLSSLYD LLEQNL R++EP+SRVE++HIAELI L    VE KLSQMILDK F G LDQG GCLI++++P+ D  Y A LE I NMG VVD L    A  +
Sbjct:  190 AAKTSANAVYCPPMLQGNLDLQSGILHADDMDFKTAYSYFYEAYEGFTSLDDDKKALSSLKYMLLSQIMLNSVSEVKSLLTGKHAIRYAGRDIEAMRAIAQAHENRSLADFEKALQDYKPELASDPIIRSHLSSLYDNLLEQNLLRVVEPFSRVEVSHIAELIGLSTVQVEGKLSQMILDKIFYGILDQGSGCLIVYDEPQQDKTYEAALEVIKNMGTVVDLLIENKASAL 420          
BLAST of CX069592 vs. ExPASy Swiss-Prot
Match: RPN6_YEAST (26S proteasome regulatory subunit RPN6 OS=Saccharomyces cerevisiae GN=RPN6 PE=1 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 2.316e-52
Identity = 113/232 (48.71%), Postives = 152/232 (65.52%), Query Frame = -2
Query:  225 AARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXFNALED----PRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQ-YVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSA 905
            AARTAAN+IY P      +DL SGILH E+KDYKTA+SY       ++ L       +A   LKYMLL KIM++  DDV  I+++K   + Y    +DAMKAVA+A++ RSL  F TAL+ ++ +L  D +   H ++LYDTLLE NLC++IEP+  VEI+HI+++I L    VE KLSQMILDK F G LDQG G L ++E P  DA Y + LE +  + KVVD LF +++
Sbjct:  200 AARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVVDQLFEKAS 431          
BLAST of CX069592 vs. ExPASy Swiss-Prot
Match: YMJ5_CAEEL (Uncharacterized protein F59B2.5 OS=Caenorhabditis elegans GN=F59B2.5 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 3.836e-39
Identity = 90/230 (39.13%), Postives = 151/230 (65.65%), Query Frame = -2
Query:  228 ARTAANAIYVPPAQQGTIDLQSGILH-AEEKDYKTAYSYXXXXXXXFNALEDP-RAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYV-GPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAI--YPATLETISNMGKVVDSLFVRS 902
            A+T  N+ +  P  Q ++D+QSG+L+ AEE+DYKT++SY       F ++ D   A  +LKYM+LCKIM+++ + +AG++++K  + Y   P + A++++ADA  KRSLK F  AL + K +L ED +V  H  +L   +LE+ + R+IEPYS +E+++IA +I + +  VE+ +++MILDKK  G++DQ    ++++  PKADA   +  +L+TI  + K VD  + R+
Sbjct:  237 AKTNTNSAFASPQLQASVDMQSGVLYSAEERDYKTSFSYFYEAFEGFASIGDKINATSALKYMILCKIMLNETEQLAGLLAAKEIVAYQKSPRIIAIRSMADAFRKRSLKDFVKALAEHKIELVEDKVVAVHSQNLERNMLEKEISRVIEPYSEIELSYIARVIGMTVPPVERAIARMILDKKLMGSIDQHGDTVVVY--PKADAANQFTRSLKTIRELTKTVDVSYSRT 464          
BLAST of CX069592 vs. ExPASy Swiss-Prot
Match: CSN2_DICDI (COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum GN=csn2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.917e-14
Identity = 49/177 (27.68%), Postives = 92/177 (51.98%), Query Frame = -2
Query:  342 PAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXFNALEDPRAVFSLKYMLL-CKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 869
            P   G I    G +H  EK+++ A++        ++   + R +  LKY++L C +M+S  +      S++A      P++ AM  +  A+ K  +  FE  L+D +  + +DP +  ++  L   +  Q L +L++PY+R+ I+ I++ + +P   VE  L  +ILD K  G++DQ
Sbjct:  235 PRIMGIIRECGGKMHMAEKEWEKAHTDFFEAFKNYDEAGNSRRIQCLKYLVLACMLMLSTINPFD---STEAKPYKNDPDILAMTNLVMAYEKNDIYAFEKILKDNRKTIMDDPFIRMYIEDLLRNIRTQVLLKLLKPYTRIRISFISKELNIPSSDVESLLVSLILDNKIRGSIDQ 408          
BLAST of CX069592 vs. ExPASy Swiss-Prot
Match: CSN2_XENLA (COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis GN=csn2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.167e-13
Identity = 50/195 (25.64%), Postives = 88/195 (45.13%), Query Frame = -2
Query:  285 PAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPA 869
            P   G I    G +H  E +++ A++        ++    PR    LKY++L  +++     +    S +A      PE+ AM  +  A+    +  FE  L+   + + +DP +  H+  L   +  Q L +LI+PY+R+ I  I++ + + +  VE  L Q ILD    G +DQ    L +    +  A Y A
Sbjct:  229 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG--INPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTA 421          
BLAST of CX069592 vs. ExPASy Swiss-Prot
Match: CSN2_RAT (COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.167e-13
Identity = 50/195 (25.64%), Postives = 88/195 (45.13%), Query Frame = -2
Query:  285 PAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPA 869
            P   G I    G +H  E +++ A++        ++    PR    LKY++L  +++     +    S +A      PE+ AM  +  A+    +  FE  L+   + + +DP +  H+  L   +  Q L +LI+PY+R+ I  I++ + + +  VE  L Q ILD    G +DQ    L +    +  A Y A
Sbjct:  231 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG--INPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTA 423          
The following BLAST results are available for this feature:
BLAST of CX069592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSD11_MOUSE1.352e-6856.9626S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_HUMAN1.765e-6856.9626S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_BOVIN1.765e-6856.9626S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_DICDI8.761e-6854.3526S proteasome non-ATPase regulatory subunit 11 OS... [more]
RPN6_SCHPO1.827e-6554.55Probable 26S proteasome regulatory subunit rpn6 OS... [more]
RPN6_YEAST2.316e-5248.7126S proteasome regulatory subunit RPN6 OS=Saccharo... [more]
YMJ5_CAEEL3.836e-3939.13Uncharacterized protein F59B2.5 OS=Caenorhabditis ... [more]
CSN2_DICDI1.917e-1427.68COP9 signalosome complex subunit 2 OS=Dictyosteliu... [more]
CSN2_XENLA6.167e-1325.64COP9 signalosome complex subunit 2 (Fragment) OS=X... [more]
CSN2_RAT6.167e-1325.64COP9 signalosome complex subunit 2 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11E09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11E09-J17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069592 ID=CX069592; Name=CX069592; organism=Citrus sinensis; type=EST; length=906bp
TTTTTTTTTTTTTTTTTGCAAGAATGAACCATGGTGGAGAATTTCATCAC
AGATCAAAGAAACATAGTTAATGCAGTTACAGTGAATGTAAAATCAAGTT
TCCTACTAACATATCCATTATCAAGTCTGCAATAATTCAGAAACAATAGA
AAGACAGGAAGCAGAACCATGAACTAAGGAGTGCCCACCAAAAAACACAA
AAGAAACCCTCATGCCATAATCTTGGCAGACCTCACAAAAAGGCTGTCCA
CAACCTTGCCCATGTTGGAAATGGTTTCTAAAGTGGCAGGATAGATGGCA
TCTGCCTTAGGATCTTCAAATATGATGAGGCATCCAACGCCCTGATCTAA
TGTCCCAGCAAATTTCTTGTCCAAAATCATTTGGGATAACTTTTTCTCTA
CATGATCTATCGGCAGCTCAATGAGCTCTGCAATGTGTGCTATCTCTACC
CTTGAGTAAGGCTCAATCAACCTGCACAGGTTTTGTTCCAGAAGTGTGTC
ATAAAGAGATGAGAGGTGCCTATGCACAATTGGGTCTTCCTCAAGCTGAG
CCTTGAAATCACGTAGAGCAGTCTCAAACAACTTCAAGGACCTCTTGGAA
TGAGCATCAGCAACAGCTTTCATAGCATCTAATTCTGGCCCAACATACTG
CAGGCCAGCCTTAGAAGAAATTATCCCAGCAACATCATCAGCTTGGCTCA
CCATGATCTTGCAAAGCAACATGTATTTTAGACTAAAAACAGCCCTGGGA
TCTTCAAGAGCATTGAAAGCCTCAAATGCTTCAAAGAAATAGCTATAAGC
AGTTTTGTAATCCTTCTCTTCAGCATGTAAAATTCCGCTCTGCAAATCTA
TAGTGCCTTGTTGAGCCGGTGGCACATATATAGCATTTGCAGCTGTCCTC
GCTGCT
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