CX069591

Overview
NameCX069591
Unique NameCX069591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069591_ssr197 microsatellite CX069591_ssr197:197..208. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4299 contig Csv1_Contig4299:1..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069591 vs. ExPASy Swiss-Prot
Match: CHFR_PONAB (E3 ubiquitin-protein ligase CHFR OS=Pongo abelii GN=CHFR PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.365e-13
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  471 ICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLMRSDEEVALLDSYAYITSNLV 743
            IC ++ HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH L+N+ ++ L  H    RS+E+V  +D+   IT +++
Sbjct:  214 ICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRSEEDVQSMDARNKITQDML 298          
BLAST of CX069591 vs. ExPASy Swiss-Prot
Match: CHFR_MOUSE (E3 ubiquitin-protein ligase CHFR OS=Mus musculus GN=Chfr PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.365e-13
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  471 ICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLMRSDEEVALLDSYAYITSNLV 743
            IC ++ HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH L+N+ ++ L  H    RS+E+V  +D+   IT +++
Sbjct:  305 ICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRSEEDVRSMDARNKITQDML 389          
BLAST of CX069591 vs. ExPASy Swiss-Prot
Match: CHFR_HUMAN (E3 ubiquitin-protein ligase CHFR OS=Homo sapiens GN=CHFR PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.365e-13
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  471 ICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLMRSDEEVALLDSYAYITSNLV 743
            IC ++ HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH L+N+ ++ L  H    RS+E+V  +D+   IT +++
Sbjct:  306 ICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRSEEDVQSMDARNKITQDML 390          
BLAST of CX069591 vs. ExPASy Swiss-Prot
Match: CHFR_XENTR (E3 ubiquitin-protein ligase CHFR OS=Xenopus tropicalis GN=chfr PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.850e-13
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = 3
Query:  471 ICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLMRSDEEVALLDSYAYITSNLV 743
            IC  + HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH L+N+ ++ L  H    RS+E+   +D+   IT +++
Sbjct:  269 ICQELLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNHILNNLVEAYLIQHPEKCRSEEDRCSMDARNKITQDML 353          
BLAST of CX069591 vs. ExPASy Swiss-Prot
Match: CHFR_XENLA (E3 ubiquitin-protein ligase CHFR OS=Xenopus laevis GN=chfr PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.850e-13
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = 3
Query:  471 ICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLMRSDEEVALLDSYAYITSNLV 743
            IC  + HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH L+N+ ++ L  H    RS+E+   +D+   IT +++
Sbjct:  268 ICQELLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNHILNNLVEAYLIQHPEKCRSEEDRCSMDARNKITQDML 352          
BLAST of CX069591 vs. ExPASy Swiss-Prot
Match: CHFR_DANRE (E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN=chfr PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.392e-12
Identity = 35/114 (30.70%), Postives = 63/114 (55.26%), Query Frame = 3
Query:  471 ICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLMRSDEEVALLDSYAYITSNLVIRNGKKHRRKRAHSPIDEESDSN 812
            IC ++ +D ++V PC+H FC  C+S W+ RS        CP CR  V+ + +NH L+N+ ++ L  H    R+++++  +D+   IT +++       + K   S  DEE+ S+
Sbjct:  279 ICQDLLYDCISVQPCMHTFCAACYSGWMERSS------FCPTCRCPVERIRKNHILNNLVEAYLLQHPEKCRTEDDLRSMDARNKITQDML-------QPKVERSFSDEEASSD 379          
The following BLAST results are available for this feature:
BLAST of CX069591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CHFR_PONAB1.365e-1337.36E3 ubiquitin-protein ligase CHFR OS=Pongo abelii G... [more]
CHFR_MOUSE1.365e-1337.36E3 ubiquitin-protein ligase CHFR OS=Mus musculus G... [more]
CHFR_HUMAN1.365e-1337.36E3 ubiquitin-protein ligase CHFR OS=Homo sapiens G... [more]
CHFR_XENTR8.850e-1336.26E3 ubiquitin-protein ligase CHFR OS=Xenopus tropic... [more]
CHFR_XENLA8.850e-1336.26E3 ubiquitin-protein ligase CHFR OS=Xenopus laevis... [more]
CHFR_DANRE4.392e-1230.70E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_11E08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11E08-J15-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069591 ID=CX069591; Name=CX069591; organism=Citrus sinensis; type=EST; length=812bp
GAAAAATAATACATAACCAACGGAAGAAGAAAGGGGAGGTTTTGGATCAA
AATACAAGTCAAAGTTATGGCTGAAGTTGGCGAATGCTCTGCGTCTAAAC
CCTCTCGTGAAATCTGGGCAAAGCTTGAACCATCAGACTCAAGGTTTGCC
GATGTTGACATAAGCTCAAATGAGGTGGTTATATGCTCAGAGATCACTTC
TTCTTCTTCTGACAAACATGAATGGTGCAAAATTACTAGGAATTCTGATC
TACATTCAGCTAAGATGCAAAATAAAAGTTCAAATGCTATACTTGTCGAT
GATACCATTGTCCAAAATGAAGAGGTCGTTGACATTAAGTGTGGAACTGA
AATTATTCCTGGCCCTGATAGAGAAGTATATTTGAACTTCAGATTTAAAG
TAGTACCTGTACAAGAATCCAGCAATCAGCAATTGGAGATTTCCATTGAC
ATCGAGCATGCAAAATCTGCATCTGCTTGAATATATGGCATGATGTTGTT
ACAGTTGCTCCTTGCCTTCATAATTTCTGCAATGGATGCTTCTCTGAGTG
GTTAAGACGATCACAGGAAAAACGTTCGACTGTACTTTGTCCGCATTGTA
GAGCAGTTGTACAATTTGTTGGAAGAAACCATTATTTGCATAATATTGAG
CAGAGTATACTACAAGCTCACTCTTCACTTATGCGTTCTGATGAAGAAGT
TGCACTTCTTGATTCCTATGCGTATATAACATCAAATCTTGTAATTAGGA
ATGGAAAGAAACATCGTCGGAAGAGGGCACACTCACCAATTGATGAAGAA
AGTGACAGCAAT
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