CX069590

Overview
NameCX069590
Unique NameCX069590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2958 contig Csv1_Contig2958:81..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX069590 vs. ExPASy Swiss-Prot
Match: CHFR_DANRE (E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN=chfr PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.441e-13
Identity = 59/207 (28.50%), Postives = 83/207 (40.10%), Query Frame = -3 
Query:   39 FHCNQTTVHLQCQGCGGMMPSRN------DSVPQHCLGCDRAFCGAYWHAQMVARSDSQPMCSHETFKPISERTIS-RIPFLAHEMNRHEQDVTERCIRQMGRSLQDVISDWVEKLNNREIDRTRMPLNHAE--AITARSHICNECYDKLVSFLLYWFRIAMPKHLLPADAKQREDCWYGYACRTQHHNEEHARKRNHVCRPTRGSN 632
            F C     HL C  C   MP R          PQHCL C + FC  YW    +          H      SE  ++ +        N++E +V +  +   G S + ++ D ++ L        +  L H     ITA S +C  C  +    L Y +R  +P   LP     R +C++G  CRTQ     HA K NH+C  TR  N
Sbjct:  448 FRCPPQASHLICTCCLQPMPDRRFEHLPPQVSPQHCLVCQKPFCHVYWGCPRIG--------CHGCLARFSELNLNDKCLDGVFNGNQYESEVLQNYLSCRGMSWRHLLQDSLQAL--------QQGLYHLSDYRITANSFLCYCCGLRTFRELAYKYRERIPPSELPDAVTNRPNCYWGRNCRTQ-VKAHHALKFNHICEQTRFKN 637
The following BLAST results are available for this feature:
BLAST of CX069590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CHFR_DANRE4.441e-1328.50E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_11E08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11E08-J15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069590 ID=CX069590; Name=CX069590; organism=Citrus sinensis; type=EST; length=874bp
TTCAAAAAAAAAAAATATGTGAACCGTACGCGTTACATATTAGAGCCCCT
GGTTGGACGACAAACATGATTTCTTTTACGAGCATGTTCTTCATTGTGGT
GCTGTGTTCGACATGCGTATCCATACCAGCAATCTTCTCTTTGCTTTGCA
TCTGCTGGTAGAAGATGTTTGGGCATTGCAATCCGAAACCAGTACAAGAG
AAAGGAGACCAATTTATCATAACACTCGTTGCAAATATGACTCCTAGCAG
TTATCGCCTCAGCATGATTCAATGGCATCCTTGTTCGATCAATCTCTCTA
TTGTTCAGCTTCTCAACCCAATCGGATATAACATCCTGCAATGATCTCCC
CATTTGTCTAATACACCTCTCTGTGACATCTTGTTCGTGCCGATTCATTT
CGTGCGCAAGAAATGGAATCCTAGAGATGGTGCGTTCTGAGATAGGTTTG
AAAGTTTCATGACTGCACATAGGTTGGGAGTCACTTCTAGCAACCATTTG
AGCATGCCAATATGCACCACAAAATGCTCTATCACATCCCAAACAGTGTT
GTGGTACACTGTCATTCCTGGACGGCATCATTCCTCCGCATCCCTGACAT
TGTAAATGCACTGTGGTCTGGTTGCAGTGGAACCCATTAATTTCAGTACC
ACATTGAGGACATGGAAGCTCATTGCTGTCACTTTCTTCATCAATTGGTG
AGTGTGCCCTCTTCCGACGATGTTTCTTTCCATTCCTAATTACAAGATTT
GATTTTATATACGCATAGGAATCAAGAAGTGCAACTTCTTCATCAGAACG
CCTAAATGAAGAGTGAGCTTGTAGTATACTCTGCTCAATATTATGCAAAT
AATGGTTTCTTCCAACAAATTGTA
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