CX069569

Overview
NameCX069569
Unique NameCX069569
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4294 contig Csv1_Contig4294:79..970. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX069569 vs. ExPASy Swiss-Prot
Match: NIP51_ARATH (Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.195e-18
Identity = 56/127 (44.09%), Postives = 62/127 (48.82%), Query Frame = 3 
Query:  132 VGELAGIAVGATVMLNILIAGLVTLNRFLYSF*LD*FATA*QAHFTLELMRRCLHLIIMILTRPSSGGSMNPVRTLGPAVAAGNYEKLWIFXXXXXXXXXXXXXXXXVVKLRDNETDPPREARSFRR 512
            VGELAGIAVGATVMLNIL+AG                                          PS+GGSMNPVRTLGPAVA+GNY  LW++                 VKL D+ TDPPR  RSFRR
Sbjct:  220 VGELAGIAVGATVMLNILVAG------------------------------------------PSTGGSMNPVRTLGPAVASGNYRSLWVYLVAPTLGAISGAAVYTGVKLNDSVTDPPRPVRSFRR 304
[Close]
BLAST of CX069569 vs. ExPASy Swiss-Prot
Match: NIP31_ORYSJ (Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.890e-16
Identity = 54/127 (42.52%), Postives = 59/127 (46.46%), Query Frame = 3 
Query:  132 VGELAGIAVGATVMLNILIAGLVTLNRFLYSF*LD*FATA*QAHFTLELMRRCLHLIIMILTRPSSGGSMNPVRTLGPAVAAGNYEKLWIFXXXXXXXXXXXXXXXXVVKLRDNETDPPREARSFRR 512
            VGELAGIAVGA V LNILIAG                                          P++GGSMNPVRTLGPAVAAGNY +LWI+                 VKLRD   + PR  RSFRR
Sbjct:  227 VGELAGIAVGAAVTLNILIAG------------------------------------------PTTGGSMNPVRTLGPAVAAGNYRQLWIYLIAPTLGAVAGAGVYTAVKLRDENGETPRPQRSFRR 311
[Close]
BLAST of CX069569 vs. ExPASy Swiss-Prot
Match: NIP31_MAIZE (Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.292e-15
Identity = 53/127 (41.73%), Postives = 59/127 (46.46%), Query Frame = 3 
Query:  132 VGELAGIAVGATVMLNILIAGLVTLNRFLYSF*LD*FATA*QAHFTLELMRRCLHLIIMILTRPSSGGSMNPVRTLGPAVAAGNYEKLWIFXXXXXXXXXXXXXXXXVVKLRDNETDPPREARSFRR 512
            VGELAGIAVGA V LNIL+AG                                          P++GGSMNPVRTLGPAVAAGNY +LWI+                 VKLRD   + PR  RSFRR
Sbjct:  218 VGELAGIAVGAAVTLNILVAG------------------------------------------PTTGGSMNPVRTLGPAVAAGNYRQLWIYLLAPTLGALAGASVYKAVKLRDENGETPRTQRSFRR 302
The following BLAST results are available for this feature:
BLAST of CX069569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NIP51_ARATH6.195e-1844.09Probable aquaporin NIP5-1 OS=Arabidopsis thaliana ... [more]
NIP31_ORYSJ9.890e-1642.52Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica G... [more]
NIP31_MAIZE1.292e-1541.73Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_11D02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11D02-H3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069569 ID=CX069569; Name=CX069569; organism=Citrus sinensis; type=EST; length=892bp
CAGTACGTTCTTTTCTTTTTTTTCTTTTAGTTCTTTTATTACAATTTAAT
AAAAATTAGTTGCACCATTAAATATCTAACCCAATTCAATTCAAACTACA
TTTAACTCTTTGACTCTTGATATACATATAGGTGGGGGAGTTGGCAGGAA
TAGCTGTTGGAGCTACTGTTATGCTCAACATTCTCATAGCAGGGTTGGTG
ACTTTAAACCGCTTTCTTTATTCTTTCTGATTAGATTAATTCGCAACCGC
ATAACAAGCACATTTTACTTTAGAATTAATGCGCCGATGCTTACATTTGA
TAATTATGATTTTGACCAGGCCATCAAGTGGTGGTTCAATGAACCCTGTG
CGGACTCTGGGGCCCGCCGTCGCGGCAGGAAACTACGAGAAATTATGGAT
ATTTCTACTGGCACCCACGCTTGGAGCTCTAGCTGGTGCTACTACCTACA
CTGTCGTCAAGCTCCGTGACAACGAGACCGATCCTCCACGCGAGGCCAGA
AGCTTCCGTCGCTAGCTACACAACATGCATTGTTATGTTGCAGCCTTTGT
TTGACAAATATTATTGAGTGTTTGTGTCGTTTGTGGTATAATTTCAAGAG
TGACTGAGAAGAATAAAAAAGCGGTCTATATGATGTGATATATACAAAGT
AAACGCTCTACAGTTAAGTTGAATAATTGAGGCACTGCGCGTGTGTGGTG
CTCATTATTTGGCCGGCCGGGTCATTGCTTTGTTGATTTGCTGTGTGATA
TTTGGAGGAGTGCTTTGTCTTTGGCTCTTCTTCAAGATGTTTGATTTTGC
TTTGGATGTCGTCTGATGTTTACTTCTACTAAGTTTTAATCAATAAAAGT
GCACTAGCATGTTTGTGTTTGTGATATATATCTGTCGTTTTC
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