DR403915

Overview
NameDR403915
Unique NameDR403915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403915 vs. ExPASy Swiss-Prot
Match: DCTD_RAT (Deoxycytidylate deaminase OS=Rattus norvegicus GN=Dctd PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.789e-25
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 2
Query:  272 KRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYP*VFCSHLS 520
            KR  YL W +YFMA+AFLSA+RSKDP+ QVGAC+V+ +  I+GIGYNG P GCSDD LPW + ++  + L+TKYP V  + L+
Sbjct:    8 KRDDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLPWRRTAE--NKLDTKYPYVCHAELN 88          

HSP 2 Score: 30.8018 bits (68), Expect = 9.789e-25
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 1
Query:  613 YVCHAEVNAILNTNHA 660
            YVCHAE+NAI+N N A
Sbjct:   81 YVCHAELNAIMNKNSA 96          
BLAST of DR403915 vs. ExPASy Swiss-Prot
Match: DCTD_MOUSE (Deoxycytidylate deaminase OS=Mus musculus GN=Dctd PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.789e-25
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 2
Query:  272 KRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYP*VFCSHLS 520
            KR  YL W +YFMA+AFLSA+RSKDP+ QVGAC+V+ +  I+GIGYNG P GCSDD LPW + ++  + L+TKYP V  + L+
Sbjct:    8 KRDDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLPWRRTAE--NKLDTKYPYVCHAELN 88          

HSP 2 Score: 30.8018 bits (68), Expect = 9.789e-25
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 1
Query:  613 YVCHAEVNAILNTNHA 660
            YVCHAE+NAI+N N A
Sbjct:   81 YVCHAELNAIMNKNSA 96          
BLAST of DR403915 vs. ExPASy Swiss-Prot
Match: DCTD_PONAB (Deoxycytidylate deaminase OS=Pongo abelii GN=DCTD PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.728e-23
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 2
Query:  272 KRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYP*VFCSHLSTF*FQPST 544
            KR  YL W +YFMA+AFLSA+RSKDPN QVGAC+V+ +  I+GIGYNG P GCSDD+LPW + +K  + L+TKYP V  + L+    + ST
Sbjct:    8 KRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDQLPWRRTAK--NKLDTKYPYVCHAELNAIMNKNST 96          
BLAST of DR403915 vs. ExPASy Swiss-Prot
Match: DCTD_HUMAN (Deoxycytidylate deaminase OS=Homo sapiens GN=DCTD PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.120e-22
Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  272 KRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYP*VFCSHLSTF*FQPST 544
            KR  YL W +YFMA+AFLSA+RSKDPN QVGAC+V+ +  I+GIGYNG P GCSDD LPW + ++  + L+TKYP V  + L+    + ST
Sbjct:    8 KRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAE--NKLDTKYPYVCHAELNAIMNKNST 96          
BLAST of DR403915 vs. ExPASy Swiss-Prot
Match: DCTD_DROME (Probable deoxycytidylate deaminase OS=Drosophila melanogaster GN=CG6951 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.706e-21
Identity = 51/84 (60.71%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  248 SRSPFDPSKRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIG---DPLETK 490
            S+SP +  KRK YL WDDYFMA + LSA+RSKDP  QVGAC+V     I+ IGYNGFPR CSDD  PW+K  K     DPLE K
Sbjct:   14 SKSP-ESHKRKEYLHWDDYFMATSLLSAKRSKDPVTQVGACIVDSQNRIVAIGYNGFPRNCSDDVFPWSKAKKGSQEFDPLEDK 96          
The following BLAST results are available for this feature:
BLAST of DR403915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
DCTD_RAT9.789e-2557.83Deoxycytidylate deaminase OS=Rattus norvegicus GN=... [more]
DCTD_MOUSE9.789e-2557.83Deoxycytidylate deaminase OS=Mus musculus GN=Dctd ... [more]
DCTD_PONAB1.728e-2357.14Deoxycytidylate deaminase OS=Pongo abelii GN=DCTD ... [more]
DCTD_HUMAN1.120e-2256.04Deoxycytidylate deaminase OS=Homo sapiens GN=DCTD ... [more]
DCTD_DROME4.706e-2160.71Probable deoxycytidylate deaminase OS=Drosophila m... [more]
back to top
Properties
Property NameValue
Genbank descriptionCSAH-PNP1246K16 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246K16 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403915 ID=DR403915; Name=DR403915; organism=Citrus sinensis; type=EST; length=661bp
GGGGAAAGGATGGAGGGCGATTAATAAAATTTCCAGCAGATTTTCTCCGA
TTCCGATATTTCTCGGGCGGCTTTGAAACTCCATGAACTCACGAGAGCTA
ACTCTGGTTTCAACAGCCGCTGTCCTTGGAGCGTTAGTTTCTGCAGTTGC
TTTTCGTTTCTTCTTCTCCTCTAACCCTAAAAAGCTCCTCTCTCGAATCG
ATTCATCCCAATCCCAAAGCGGTGTCGTGGCTTCCAAAGTAGTTTCTTCC
AGGAGCCCTTTTGATCCCTCAAAACGCAAAGGATACTTGTCATGGGATGA
TTATTTTATGGCAATTGCATTTTTATCGGCTGAAAGGTCCAAAGACCCTA
ACAGGCAGGTTGGAGCATGCTTGGTGAGTCAAGATGGCATAATTCTTGGC
ATTGGCTATAATGGGTTTCCAAGGGGTTGTTCAGATGACAAGCTTCCATG
GGCAAAGAAATCCAAAATAGGGGATCCTTTGGAGACAAAATATCCGTAAG
TGTTCTGCTCTCATCTCTCCACTTTCTGATTTCAACCTTCTACTGCTAAA
ATCCTCTTCCCTGCCTCTCCAACCAACAGCGGTTTGTGACCTCATCAATA
ACTTTTCTATATTATGTTTGTCATGCTGAAGTTAATGCCATACTAAACAC
GAACCACGCAT
back to top