CX069554

Overview
NameCX069554
Unique NameCX069554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4292 contig Csv1_Contig4292:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069554 vs. ExPASy Swiss-Prot
Match: ALKB2_MOUSE (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Mus musculus GN=Alkbh2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.269e-20
Identity = 65/177 (36.72%), Postives = 91/177 (51.41%), Query Frame = 1
Query:  202 IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 732
            ++VFG+    PR        G+T   +SG    P  W   P L+ + D V +V  G  FN +L+NRYK G D++G H DDE+       IASVSFG  RDF+ + K S+  + RRT              ++     L HGS+L+M   T   W HS+P R +  + R+NLTFR +L
Sbjct:   77 VQVFGKWHSVPRKQATYGDAGLTYT-FSGLTLTPKPW--VPVLERVRDRVCEVT-GQTFNFVLVNRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFIFRHKDSRGKRPRRT--------------VEVVRLQLAHGSLLMMNPPTNTHWYHSLPIRKRVLAPRVNLTFRKIL 235          
BLAST of CX069554 vs. ExPASy Swiss-Prot
Match: ALKB2_BOVIN (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Bos taurus GN=ALKBH2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.691e-20
Identity = 64/177 (36.16%), Postives = 88/177 (49.72%), Query Frame = 1
Query:  202 IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 732
            ++VFG+    PR        G+T   +SG    P  W   P L+ + D V  ++ G  FN +L+NRYK G D++G H DDE+       IASVSFG  RDF+ + K S+     R               L+     L HGS+L+M   T   W HS+P R K  + R+NLTFR +L
Sbjct:   98 VQVFGKWHSVPRKQATYGDTGLTYT-FSGLTLSPKPW--IPVLERVRDRV-SLVTGQTFNFVLINRYKDGQDHIGEHRDDERELALGSPIASVSFGACRDFVFRHKDSRGKHPSR--------------RLEVVRLQLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKIL 256          
BLAST of CX069554 vs. ExPASy Swiss-Prot
Match: ALKB3_BOVIN (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Bos taurus GN=ALKBH3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19
Identity = 70/210 (33.33%), Postives = 97/210 (46.19%), Query Frame = 1
Query:  106 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGY--RPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHV 729
            S V   P  + ++++   F+ L   +PW + T      +  QPR T +    G     YS     P+P+    + P+  +L   ++   G  FNSLL N Y+   D V WH+DDE   G  P IAS+SFG  R F ++ KP        T  E V                L HG++L+M G TQ DW H VP+   +   RINLTFR V
Sbjct:   88 SRVCLCPGFVDLKEADSVFEQLCRDVPWKQRTGIRDDVTYQQPRLTAWY---GELPYTYSRITMEPNPH----WHPVLLMLKNQIEENTGHSFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRMFEMRKKPPPEDNGDYTYVERV-------------KIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRINLTFRTV 277          
BLAST of CX069554 vs. ExPASy Swiss-Prot
Match: ALKB3_HUMAN (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Homo sapiens GN=ALKBH3 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 68/210 (32.38%), Postives = 98/210 (46.67%), Query Frame = 1
Query:  106 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGY--RPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHV 729
            S V  +P  + ++++    + L   +PW + T      +  QPR T +    G     YS     P+P+    + P+   L   ++   G  FNSLL N Y+   D V WH+DDE   G  P IAS+SFG  R F ++ KP          D    +R+K           L HG++L+M G TQ DW H VP+   +   R+NLTFR V
Sbjct:   88 SRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWY---GELPYTYSRITMEPNPH----WHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKP----PPEENGDYTYVERVK---------IPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTV 277          
BLAST of CX069554 vs. ExPASy Swiss-Prot
Match: ALKB2_HUMAN (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Homo sapiens GN=ALKBH2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 65/177 (36.72%), Postives = 86/177 (48.59%), Query Frame = 1
Query:  202 IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 732
            ++VFG+    PR        G+T   +SG    P  W   P L+ I D V  V  G  FN +L+NRYK G D++G H DDE+       IASVSFG  RDF+ + K S+     R               +      L HGS+L+M   T   W HS+P R K  + R+NLTFR +L
Sbjct:   99 VQVFGKWHSVPRKQATYGDAGLTYT-FSGLTLSPKPW--IPVLERIRDHVSGVT-GQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRGKSPSR--------------RVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKIL 257          
BLAST of CX069554 vs. ExPASy Swiss-Prot
Match: ALKB3_RAT (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Rattus norvegicus GN=Alkbh3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 67/214 (31.31%), Postives = 96/214 (44.86%), Query Frame = 1
Query:  106 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIV------LKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHV 729
            S V  +P  + ++++    + L   +PW +        +  QPR T +            G  P+ YS     P    L ++      ++   G  FNSLL N Y+   D V WH+DDE   GS P IAS+SFG  R F ++ KP          D    +R+K           L HG++L+M G TQ DW H VP+   +   R+NLTFR V
Sbjct:   88 SRVCLYPGFVDLKEADWILERLCQDVPWKQRMGIREDITYPQPRLTAWY-----------GELPYTYSRVTMEPNPHWLPVLWTLKSRIEENTGHTFNSLLCNFYRDEKDSVDWHSDDEPSLGSCPVIASLSFGATRTFEMRKKP----PPEENGDYTYVERVK---------IPLDHGTLLIMEGATQADWQHRVPKEYHSRERRVNLTFRTV 277          
BLAST of CX069554 vs. ExPASy Swiss-Prot
Match: ALKB3_MOUSE (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Mus musculus GN=Alkbh3 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.512e-18
Identity = 66/214 (30.84%), Postives = 95/214 (44.39%), Query Frame = 1
Query:  106 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIV------LKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHV 729
            S V  +P  + ++++    + L   +PW +        +  QPR T +            G  P+ YS     P    L ++      ++      FNSLL N Y+   D V WH+DDE   GS P IAS+SFG  R F ++ KP          D    +R+K           L HG++L+M G TQ DW H VP+   +   R+NLTFR V
Sbjct:   88 SRVCLYPGFVDLKEADWILEQLCKDVPWKQRMGIREDVTYPQPRLTAWY-----------GELPYTYSRITMEPNPHWLPVLWTLKSRIEENTSHTFNSLLCNFYRDEKDSVDWHSDDEPSLGSCPVIASLSFGATRTFEMRKKP----PPEENGDYTYVERVK---------IPLDHGTLLIMEGATQADWQHRVPKEYHSRQPRVNLTFRTV 277          
The following BLAST results are available for this feature:
BLAST of CX069554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ALKB2_MOUSE1.269e-2036.72Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
ALKB2_BOVIN3.691e-2036.16Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
ALKB3_BOVIN1.832e-1933.33Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
ALKB3_HUMAN3.124e-1932.38Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
ALKB2_HUMAN5.330e-1936.72Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
ALKB3_RAT1.187e-1831.31Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
ALKB3_MOUSE4.512e-1830.84Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_11C05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C05-F9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069554 ID=CX069554; Name=CX069554; organism=Citrus sinensis; type=EST; length=733bp
AGTTTGAGGTTTAGAGCAAAGGAAAAGGAAGCGAAAGCGAACCCAGACGA
TGATGATGAGAAGAACCAGAAAAAACAACGAATGGTTGTGGATCTGGGAA
ATGGAAGTGAAGTTATTTATTTTCCAAGAATTATAAAAATGGAGGATTCT
TGGAAATTCTTTGATTACCTCAACAATCGAATCCCTTGGAACAGACCCAC
CATTCGCGTCTTCGGTCGATCTTGCCTTCAGCCTAGAGACACATGTTATG
TTGCTAGTGAAGGAGTGACACAATTAATTTACAGTGGCTACAGGCCACAT
CCATATTCTTGGGATGATTTTCCTCCCCTCAAGGACATTTTGGACATAGT
CCTCAAAGTGCTTCCTGGGAGTAGATTTAACAGCTTATTATTGAATAGGT
ATAAAGGTGGCAATGACTATGTAGGTTGGCATGCCGATGATGAGAAGCTT
TATGGATCCACTCCCGAGATTGCCTCTGTTTCATTTGGATGTGAGCGCGA
CTTCTTGTTGAAGATTAAGCCAAGTAAATCATACCAAGATAGAAGAACTG
ATGATGAACCTGTGAGCAAGCGTTTGAAGAAGAAAGGCAACTTGGATCAG
CACTCATTCACACTAAAGCATGGATCAATGTTGGTGATGAGAGGCTACAC
ACAGCGGGATTGGATACACTCGGTTCCTAGGCGTGCAAAAGCAGAGTCTA
CTCGAATCAACCTCACCTTCAGGCATGTTCTGC
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