CX069553

Overview
NameCX069553
Unique NameCX069553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4292 contig Csv1_Contig4292:101..996. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069553 vs. ExPASy Swiss-Prot
Match: ALKB2_MOUSE (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Mus musculus GN=Alkbh2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.761e-20
Identity = 65/177 (36.72%), Postives = 91/177 (51.41%), Query Frame = -3
Query:  265 IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 795
            ++VFG+    PR        G+T   +SG    P  W   P L+ + D V +V  G  FN +L+NRYK G D++G H DDE+       IASVSFG  RDF+ + K S+  + RRT              ++     L HGS+L+M   T   W HS+P R +  + R+NLTFR +L
Sbjct:   77 VQVFGKWHSVPRKQATYGDAGLTYT-FSGLTLTPKPW--VPVLERVRDRVCEVT-GQTFNFVLVNRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFIFRHKDSRGKRPRRT--------------VEVVRLQLAHGSLLMMNPPTNTHWYHSLPIRKRVLAPRVNLTFRKIL 235          
BLAST of CX069553 vs. ExPASy Swiss-Prot
Match: ALKB3_BOVIN (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Bos taurus GN=ALKBH3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.124e-20
Identity = 72/215 (33.49%), Postives = 99/215 (46.05%), Query Frame = -3
Query:  253 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGY--RPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVLQ*PR 891
            S V   P  + ++++   F+ L   +PW + T      +  QPR T +    G     YS     P+P+    + P+  +L   ++   G  FNSLL N Y+   D V WH+DDE   G  P IAS+SFG  R F ++ KP        T  E V                L HG++L+M G TQ DW H VP+   +   RINLTFR V   PR
Sbjct:   88 SRVCLCPGFVDLKEADSVFEQLCRDVPWKQRTGIRDDVTYQQPRLTAWY---GELPYTYSRITMEPNPH----WHPVLLMLKNQIEENTGHSFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRMFEMRKKPPPEDNGDYTYVERV-------------KIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRINLTFRTVYPDPR 282          
BLAST of CX069553 vs. ExPASy Swiss-Prot
Match: ALKB2_BOVIN (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Bos taurus GN=ALKBH2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.124e-20
Identity = 64/177 (36.16%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  265 IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 795
            ++VFG+    PR        G+T   +SG    P  W   P L+ + D V  ++ G  FN +L+NRYK G D++G H DDE+       IASVSFG  RDF+ + K S+     R               L+     L HGS+L+M   T   W HS+P R K  + R+NLTFR +L
Sbjct:   98 VQVFGKWHSVPRKQATYGDTGLTYT-FSGLTLSPKPW--IPVLERVRDRV-SLVTGQTFNFVLINRYKDGQDHIGEHRDDERELALGSPIASVSFGACRDFVFRHKDSRGKHPSR--------------RLEVVRLQLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKIL 256          
BLAST of CX069553 vs. ExPASy Swiss-Prot
Match: ALKB3_HUMAN (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Homo sapiens GN=ALKBH3 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.740e-20
Identity = 70/215 (32.56%), Postives = 100/215 (46.51%), Query Frame = -3
Query:  253 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGY--RPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVLQ*PR 891
            S V  +P  + ++++    + L   +PW + T      +  QPR T +    G     YS     P+P+    + P+   L   ++   G  FNSLL N Y+   D V WH+DDE   G  P IAS+SFG  R F ++ KP          D    +R+K           L HG++L+M G TQ DW H VP+   +   R+NLTFR V   PR
Sbjct:   88 SRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWY---GELPYTYSRITMEPNPH----WHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKP----PPEENGDYTYVERVK---------IPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDPR 282          
BLAST of CX069553 vs. ExPASy Swiss-Prot
Match: ALKB3_RAT (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Rattus norvegicus GN=Alkbh3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.321e-19
Identity = 69/219 (31.51%), Postives = 98/219 (44.75%), Query Frame = -3
Query:  253 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIV------LKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVLQ*PR 891
            S V  +P  + ++++    + L   +PW +        +  QPR T +            G  P+ YS     P    L ++      ++   G  FNSLL N Y+   D V WH+DDE   GS P IAS+SFG  R F ++ KP          D    +R+K           L HG++L+M G TQ DW H VP+   +   R+NLTFR V   PR
Sbjct:   88 SRVCLYPGFVDLKEADWILERLCQDVPWKQRMGIREDITYPQPRLTAWY-----------GELPYTYSRVTMEPNPHWLPVLWTLKSRIEENTGHTFNSLLCNFYRDEKDSVDWHSDDEPSLGSCPVIASLSFGATRTFEMRKKP----PPEENGDYTYVERVK---------IPLDHGTLLIMEGATQADWQHRVPKEYHSRERRVNLTFRTVYPDPR 282          
BLAST of CX069553 vs. ExPASy Swiss-Prot
Match: ALKB2_HUMAN (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Homo sapiens GN=ALKBH2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.399e-19
Identity = 65/177 (36.72%), Postives = 86/177 (48.59%), Query Frame = -3
Query:  265 IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 795
            ++VFG+    PR        G+T   +SG    P  W   P L+ I D V  V  G  FN +L+NRYK G D++G H DDE+       IASVSFG  RDF+ + K S+     R               +      L HGS+L+M   T   W HS+P R K  + R+NLTFR +L
Sbjct:   99 VQVFGKWHSVPRKQATYGDAGLTYT-FSGLTLSPKPW--IPVLERIRDHVSGVT-GQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRGKSPSR--------------RVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKIL 257          
BLAST of CX069553 vs. ExPASy Swiss-Prot
Match: ALKB3_MOUSE (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Mus musculus GN=Alkbh3 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.262e-18
Identity = 68/219 (31.05%), Postives = 97/219 (44.29%), Query Frame = -3
Query:  253 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIV------LKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVLQ*PR 891
            S V  +P  + ++++    + L   +PW +        +  QPR T +            G  P+ YS     P    L ++      ++      FNSLL N Y+   D V WH+DDE   GS P IAS+SFG  R F ++ KP          D    +R+K           L HG++L+M G TQ DW H VP+   +   R+NLTFR V   PR
Sbjct:   88 SRVCLYPGFVDLKEADWILEQLCKDVPWKQRMGIREDVTYPQPRLTAWY-----------GELPYTYSRITMEPNPHWLPVLWTLKSRIEENTSHTFNSLLCNFYRDEKDSVDWHSDDEPSLGSCPVIASLSFGATRTFEMRKKP----PPEENGDYTYVERVK---------IPLDHGTLLIMEGATQADWQHRVPKEYHSRQPRVNLTFRTVYPDPR 282          
The following BLAST results are available for this feature:
BLAST of CX069553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ALKB2_MOUSE1.761e-2036.72Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
ALKB3_BOVIN5.124e-2033.49Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
ALKB2_BOVIN5.124e-2036.16Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
ALKB3_HUMAN8.740e-2032.56Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
ALKB3_RAT3.321e-1931.51Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
ALKB2_HUMAN7.399e-1936.72Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
ALKB3_MOUSE1.262e-1831.05Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_11C05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C05-F9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069553 ID=CX069553; Name=CX069553; organism=Citrus sinensis; type=EST; length=896bp
TTTTAAATCATTCAAAGTAATCTGTTGGATTAGCTTGATTTAAATACATC
AATCTGGAAGTCACATTATAAATCATTCTCAGTGAATCCAAGATCACCAG
TTACAGCAACAGCAGCAAACAATGCTACAAAATCTCAATTTTGGTCACTG
GCTCTGGCTGTTACGAGGACAAGGTTTAGTCTCTTCTAATGCCTAATTCA
CAGAATCAAAAAAAAGAAAAAAAAAAGGCTACACTTTCCATTAATCCCAG
GACCTAGGCTACTGCAGAACATGCCTGAAGGTGAGGTTGATTCGAGTAGA
CTCTGCTTTTGCACGCCTAGGAACCGAGTGTATCCAATCCCGCTGTGTGT
AGCCTCTCATCACCAACATTGATCCATGCTTTAGTGTGAATGAGTGCTGA
TCCAAGTTGCCTTTCTTCTTCAAACGCTTGCTCACAGGTTCATCATCAGT
TCTTCTATCTTGGTATGATTTACTTGGCTTAATCTTCAACAAGAAGTCGC
GCTCACATCCAAATGAAACAGAGGCAATCTCGGGAGTGGATCCATAAAGC
TTCTCATCATCGGCATGCCAACCTACATAGTCATTGCCACCTTTATACCT
ATTCAATAATAAGCTGTTAAATCTACTCCCAGGAAGCACTTTGAGGACTA
TGTCCAAAATGTCCTTGAGGGGAGGAAAATCATCCCAAGAATATGGATGT
GGCCTGTAGCCACTGTAAATTAATTGTGTCACTCCTTCACTAGCAACATA
ACATGTGTCTCTAGGCTGAAGGCAAGATCGACCGAAGACGCGAATGGTGG
GTCTGTTCCAAGGGATTCGATTGTTGAGGTAATCAAAGAATTTCCAAGAA
TCCTCCATTTTTATAATTCTTGGGAAATAAATAACTTCACTTCCAT
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