CX069552

Overview
NameCX069552
Unique NameCX069552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069552 vs. ExPASy Swiss-Prot
Match: PAP4_ARATH (Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.814e-52
Identity = 65/127 (51.18%), Postives = 86/127 (67.72%), Query Frame = 3
Query:  108 DKRRNRV----SFFSGFSTK-----RVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWEXXXXXXXXXXXXKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFN 461
            D+ R RV    SF   F T+     + +  K+EL +AI+PL+RGA ASP+DQ R+DQ+ARK+EAVN  KEPLKS+L+NGKWE            K+P+FLR     YQ+IN+DTL+ QN+ETWPF+N
Sbjct:   45 DRERLRVQAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLARKVEAVNPTKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITN-YQSINVDTLKVQNMETWPFYN 170          

HSP 2 Score: 105.145 bits (261), Expect = 1.814e-52
Identity = 48/70 (68.57%), Postives = 60/70 (85.71%), Query Frame = 2
Query:  581 TANLVPLNSKRVAVKFDYFRIAGLIPIKSPGSGRGQLEITYLDEELRISRGNRGNLFILKMVDPSYRVPL 790
            T ++ PLNSK+VAVK   F+I G IPIK+P S RG+LEITY+DEELR+SRG++GNLFILKM DP+YR+PL
Sbjct:  173 TGDIKPLNSKKVAVKLQVFKILGFIPIKAPDSARGELEITYVDEELRLSRGDKGNLFILKMFDPTYRIPL 242          
BLAST of CX069552 vs. ExPASy Swiss-Prot
Match: PAP5_ARATH (Probable plastid-lipid-associated protein 5, chloroplastic OS=Arabidopsis thaliana GN=PAP5 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.614e-47
Identity = 61/131 (46.56%), Postives = 82/131 (62.60%), Query Frame = 3
Query:   84 KPLNSSVSDKRRNRVSFFSGF-----STKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWEXXXXXXXXXXXXKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFN 461
            K L+    D+ R R+     F       ++ +  K EL +AI+PL+RGA ASP+DQ  +DQ+ARK+EAVN  KEPLKS+L+NGKWE            K+P+FLR     YQ IN+DTL+ Q +ETWPF+N
Sbjct:   32 KLLSIRKGDRERLRIQAVFSFPPRNGGAEKRKQLKHELVEAIEPLERGATASPDDQLLIDQLARKVEAVNPTKEPLKSDLINGKWELIYTTSAAILQAKKPRFLRSLTN-YQCINMDTLKVQRMETWPFYN 161          

HSP 2 Score: 95.1301 bits (235), Expect = 1.614e-47
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = 2
Query:  581 TANLVPLNSKRVAVKFDYFRIAGLIPIKSP-GSGRGQLEITYLDEELRISRGNRGNLFILKMVDPSYRVPL 790
            T +L PLNSK VAVK   F+I G IP+K+P G+ RG+LEITY+DEELRISRG    LFILKM DP+YR+PL
Sbjct:  164 TGDLTPLNSKTVAVKLQVFKILGFIPVKAPDGTARGELEITYVDEELRISRGKGNLLFILKMFDPTYRIPL 234          
The following BLAST results are available for this feature:
BLAST of CX069552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PAP4_ARATH1.814e-5251.18Probable plastid-lipid-associated protein 4, chlor... [more]
PAP5_ARATH1.614e-4746.56Probable plastid-lipid-associated protein 5, chlor... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_11C04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C04-F7-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069552 ID=CX069552; Name=CX069552; organism=Citrus sinensis; type=EST; length=848bp
TCGCTTCTTCTTCGCTTAATTTATCCTATTCAAAACCAAATATTATAATT
AGAACCCATTTGTTATTTTGCCACCGAAACCAAAAGCCATTGAATTCTTC
GGTTTCCGACAAACGGAGAAATAGAGTTTCTTTCTTTTCAGGATTTTCGA
CCAAAAGAGTTGAGAGCTTCAAGGAGGAGCTTTTCCAGGCAATAAAGCCT
CTTGATCGTGGCGCCGAGGCCTCTCCTGAGGACCAAGCACGTGTTGATCA
GATTGCTCGCAAACTTGAGGCAGTGAATGATATAAAGGAACCTCTAAAGT
CTAACTTACTGAATGGGAAATGGGAGCTTTTATATACTACATCTCAATCA
CTTCTGCAGACAAAGAGACCAAAATTCTTGCGACCGAATGGAAAAATCTA
CCAGGCAATAAATATCGACACATTGAGAGCTCAAAATATAGAAACTTGGC
CATTTTTTAATCAGACAGAGTAGTGCTAAAAAGATGAAACGGACTGGTAT
ATGTTTAAATCTTTCTTTTTCTCCATCTAGTCCCTTTGATTCTGCCAACA
AGCAATTCCATTGCTATCCAATGTGAGGCCACAGCGAACTTGGTACCTCT
AAATTCTAAAAGAGTGGCTGTTAAATTTGACTATTTCAGAATTGCAGGCC
TGATACCAATTAAGTCACCTGGTAGCGGGCGTGGACAATTGGAAATTACA
TACTTGGACGAGGAGTTAAGAATCTCAAGAGGCAATAGAGGGAATCTGTT
CATTTTGAAAATGGTGGATCCGTCCTATAGAGTTCCTCTCTGACGCCGCC
TCAGCGACCCTTAGCAAAAAAAGGGATCATTGAAGCGCACATAAGTAA
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