CX069544

Overview
NameCX069544
Unique NameCX069544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4290 contig Csv1_Contig4290:1..556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069544 vs. ExPASy Swiss-Prot
Match: PSRP6_ARATH (50S ribosomal protein 6, chloroplastic OS=Arabidopsis thaliana GN=PSRP6 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.739e-15
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  109 MSISSFFGSQIVVVP------NLSSKKLGMEEKCNVGLVIENSSRPQKKATAHHMKTRPRKTQPWDVNRKPTVYXXXXXXXXDWT 345
            MS+S+ FG+ IV V            KLG      +G+VIE SSRPQKK+TAHH KTRP+KTQPWD+ RKPTVY        +W+
Sbjct:    1 MSVSAIFGTGIVTVAASPVLRQFQVPKLG--NGGGLGMVIECSSRPQKKSTAHHRKTRPKKTQPWDIKRKPTVYAPLPPLPAEWS 83          
BLAST of CX069544 vs. ExPASy Swiss-Prot
Match: PSRP6_SPIOL (50S ribosomal protein 6, chloroplastic OS=Spinacia oleracea GN=PSRP6 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.811e-14
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  109 MSISSFFGSQIVVVPNL--SSKKLGMEEK--------CNVGLV-IENSSRPQKKATAHHMKTRPRKTQPWDVNRKPTVYXXXXXXXXDWTLV 351
            MS+S+ FG+++V +P++  +S   G   K        C  G++ IE SSRPQKK TAHHMKTRP+KT  WD+ R P VY        +WT+V
Sbjct:    1 MSVSAIFGARVVTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHMKTRPKKTARWDIKRGPAVYPPLPPLPAEWTIV 92          
BLAST of CX069544 vs. ExPASy Swiss-Prot
Match: PSRP6_PEA (50S ribosomal protein 6, chloroplastic OS=Pisum sativum GN=PSRP6 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.811e-14
Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  112 SISSFFGSQIVVVPN--LSSKKLGMEEKCNVG-LVIENSSRPQKKATAHHMKTRPRKTQPWDVNRKPTVYXXXXXXXXDWTLV 351
            S+SS FG  + + PN  L +K +  E +   G L+IE SSRPQKK+TAHHMKTRPRK++  D NRKPTVY        D+T+V
Sbjct:    3 SVSSIFGCGVSMAPNSSLRNKAIRTERRSACGGLLIECSSRPQKKSTAHHMKTRPRKSRLSDRNRKPTVYAPLPPLPPDFTIV 85          
The following BLAST results are available for this feature:
BLAST of CX069544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSRP6_ARATH2.739e-1550.5950S ribosomal protein 6, chloroplastic OS=Arabidop... [more]
PSRP6_SPIOL8.811e-1444.5750S ribosomal protein 6, chloroplastic OS=Spinacia... [more]
PSRP6_PEA8.811e-1451.8150S ribosomal protein 6, chloroplastic OS=Pisum sa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_11B10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11B10-D19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069544 ID=CX069544; Name=CX069544; organism=Citrus sinensis; type=EST; length=556bp
GGCGAATTTGGGTACNCGGGCCCCCCCGAAAGGTGGAGGTGGACAAGAAA
TCCGTCACTCTGCAAGAGCAAACGCAGCGCAGACCAAAGCGAAGGAAACA
GAAGAGGAATGTCGATCTCCTCATTTTTCGGTTCGCAAATTGTAGTGGTT
CCCAATTTATCAAGCAAGAAGTTGGGAATGGAAGAGAAGTGCAATGTTGG
GTTGGTGATAGAGAACTCATCGAGGCCGCAGAAGAAGGCAACGGCGCATC
ACATGAAAACGAGGCCACGCAAGACTCAGCCTTGGGACGTCAATCGAAAA
CCAACCGTTTACCCTCCTCTGCCTCCTCTTCCTCCTGATTGGACACTTGT
TTCTGATGATACCGACACTGATGCATCTGCTGCTGCGCCTGAGGCCGACG
CCACTGAGCCTGCCGCTTTAGAAGCACCACTTGCGAGTGGTTAGCTTCTT
GGCTTGTGACTTCTGTCCATTTTGTTTTGGCACTCTTTGGTTCTTGTTCT
CCCTTTATGGTATCATTTTCTTGTTTTAATGATTAATGGAAATTAGCTTC
TTGCCT
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