DR403905

Overview
NameDR403905
Unique NameDR403905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4104 contig Csv1_Contig4104:136..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RK11_ARATH (50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana GN=RPL11 PE=1 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 5.323e-73
Identity = 142/176 (80.68%), Postives = 150/176 (85.23%), Query Frame = 1
Query:  160 KPSPLLSSTPRFLTVIAMAPPXXXXXXXXXXXXXXXXXXXEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLGTKKK 687
            K SPLLSSTPRFLTVIAMAPP                   EAGKATPAPPVGPALG+KGVNIMAFCKDYNARTADKAGY+IPVEITV+DD+SFTFILKTPPASVLLLKAAGVEKGSKDP+Q KVG ITI+QLR IA EKLPDLNCT+IESAMRIIAGTAANMGIDIDPP+L  KKK
Sbjct:   45 KQSPLLSSTPRFLTVIAMAPPKPGGKAKKVVGVIKLAL--EAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKAGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILEPKKK 218          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RK11_SPIOL (50S ribosomal protein L11, chloroplastic OS=Spinacia oleracea GN=rpl11 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.303e-66
Identity = 134/201 (66.67%), Postives = 155/201 (77.11%), Query Frame = 1
Query:   91 LFPSAXXXXXXXXXXXPFYDNRVKPSPLLSSTPRFLTVIAMAPPXXXXXXXXXXXXXXXXXXXEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLGTKKKEL 693
            L PS+            F ++++  SP  S++ R L+++AMAP                    EAGKATPAPPVGPALG+KGVNIMAFCKDYNARTADK G+VIPVEITV+DD+SFTFILKTPPASVLLLKA+G EKGSKDP+ +KVGKITI+QLR IATEKLPDLNCT+IESAMRIIAGTAANMGIDIDPP+L  KKKE+
Sbjct:   27 LTPSSLSLSSNPRNSLQFLNSKLFLSPP-STSHRRLSIVAMAPKPGKAKKVIGVIKLAL----EAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGFVIPVEITVFDDKSFTFILKTPPASVLLLKASGAEKGSKDPQMEKVGKITIDQLRGIATEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILVKKKKEV 222          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_CYAP4 (50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplK PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.320e-47
Identity = 91/125 (72.80%), Postives = 107/125 (85.60%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            AGKA PAPP+GPALG  GVNIM FCK+YNARTAD+AG VIPVEI+VY+DRSFTFILKTPPASVL+ KAAG+E+GS +P ++KVGKIT  QLR IA  KLPDLN   +++AMRI+AGTA NMG+ I
Sbjct:   15 AGKANPAPPIGPALGQHGVNIMMFCKEYNARTADQAGLVIPVEISVYEDRSFTFILKTPPASVLIQKAAGIERGSGEPNKKKVGKITTAQLREIAQTKLPDLNANDVDAAMRIVAGTARNMGVTI 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RK11_GUITH (50S ribosomal protein L11, chloroplastic OS=Guillardia theta GN=rpl11 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.842e-47
Identity = 91/126 (72.22%), Postives = 108/126 (85.71%), Query Frame = 1
Query:  280 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            EAGKATPAPPVGPALG +GVNI+ FCKDYNARTADKAG +IPVEITVY+D+S+TF+LKTPPASVLL KAAGV+KGS +PK+ +VG +T +Q+  IA  KLPDLN   +ESA+RII GTA NMGI +
Sbjct:   14 EAGKATPAPPVGPALGQRGVNIVMFCKDYNARTADKAGLIIPVEITVYEDKSYTFVLKTPPASVLLAKAAGVQKGSGNPKKTQVGSVTKKQVEEIAQTKLPDLNTRRLESAIRIIEGTAKNMGIGV 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_SYNR3 (50S ribosomal protein L11 OS=Synechococcus sp. (strain RCC307) GN=rplK PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.553e-47
Identity = 91/126 (72.22%), Postives = 106/126 (84.13%), Query Frame = 1
Query:  280 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            +AGKA PAPPVGPALG  GVNIMAFCK+YNART DKAG+VIPVEI+V++DRSFTFI KTPPASVL++KAAG+EKGS +  +  VG IT  QL  IA  KLPDLNC+S+ESAMRII GTA NMG+ +
Sbjct:   14 QAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKAGFVIPVEISVFEDRSFTFITKTPPASVLIVKAAGIEKGSGESAKGSVGSITRAQLEEIANTKLPDLNCSSVESAMRIIEGTARNMGVAV 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_PROMM (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplK PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.553e-47
Identity = 93/126 (73.81%), Postives = 104/126 (82.54%), Query Frame = 1
Query:  280 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            +AGKA PAPPVGPALG  GVNIMAFCK+YNART DKAG VIPVEI+V++DRSFTFI KTPPASVL+ KAAG+EKGS +    KVG ++  QL  IA  KLPDLNCTSIESAMRII GTA NMG+ I
Sbjct:   14 QAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKAGLVIPVEISVFEDRSFTFITKTPPASVLITKAAGIEKGSGESAHGKVGSLSRSQLEEIAKTKLPDLNCTSIESAMRIIEGTARNMGVSI 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_PROM5 (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplK PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.553e-47
Identity = 92/126 (73.02%), Postives = 105/126 (83.33%), Query Frame = 1
Query:  280 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            +AGKA PAPPVGPALG  GVNIMAFCK+YNART DKAG+VIPVEI+V++DRSFTFI KTPPASVL+ KAAG+EKGS +  +  VG I+  QL  IA  KLPDLNCTSIESAM++I GTA NMGI I
Sbjct:   14 QAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKAGFVIPVEISVFEDRSFTFITKTPPASVLITKAAGIEKGSGESSKGSVGNISKSQLEEIAKTKLPDLNCTSIESAMKVIEGTARNMGISI 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_THEEB (50S ribosomal protein L11 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplK PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.118e-46
Identity = 89/126 (70.63%), Postives = 106/126 (84.13%), Query Frame = 1
Query:  280 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            +AGKA PAPP+GPALG  GVNIM FCK+YNARTAD+ G V+PVEI+VY+DRSFTF+LKTPPASVL+ KAAG+EKGS +P ++KVG IT  QLR IA +K+PDLN   IE+AMRII GTA NMG+ I
Sbjct:   14 QAGKANPAPPIGPALGQHGVNIMMFCKEYNARTADQVGMVVPVEISVYEDRSFTFVLKTPPASVLIQKAAGIEKGSGEPNKKKVGSITRAQLREIAEKKMPDLNANDIEAAMRIIEGTARNMGVTI 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_SYNS3 (50S ribosomal protein L11 OS=Synechococcus sp. (strain CC9311) GN=rplK PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.118e-46
Identity = 91/126 (72.22%), Postives = 104/126 (82.54%), Query Frame = 1
Query:  280 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            +AGKA PAPPVGPALG  GVNIMAFCK+YNART DKAGYVIPVEI+V++DRSFTFI KTPPASVL+ KAAG++KGS +  +  VG I   QL  IA  KLPDLNCTS+ESAMR+I GTA NMG+ I
Sbjct:   14 QAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKAGYVIPVEISVFEDRSFTFITKTPPASVLITKAAGIQKGSGESAKGSVGSINRSQLEEIAKTKLPDLNCTSVESAMRVIEGTARNMGVAI 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_SYNPW (50S ribosomal protein L11 OS=Synechococcus sp. (strain WH7803) GN=rplK PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.118e-46
Identity = 93/126 (73.81%), Postives = 104/126 (82.54%), Query Frame = 1
Query:  280 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            +AGKA PAPPVGPALG  GVNIMAFCK+YNART DKAG+VIPVEI+V++DRSFTFI KTPPASVL+ KAAG+EKGS +  +  VG I   QL  IA  KLPDLNCTSIESAMRII GTA NMG+ I
Sbjct:   14 QAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKAGFVIPVEISVFEDRSFTFITKTPPASVLITKAAGIEKGSGESAKGSVGSIKRSQLEEIAKTKLPDLNCTSIESAMRIIEGTARNMGVAI 139          
The following BLAST results are available for this feature:
BLAST of DR403905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK11_ARATH5.323e-7380.6850S ribosomal protein L11, chloroplastic OS=Arabid... [more]
RK11_SPIOL6.303e-6666.6750S ribosomal protein L11, chloroplastic OS=Spinac... [more]
RL11_CYAP41.320e-4772.8050S ribosomal protein L11 OS=Cyanothece sp. (strai... [more]
RK11_GUITH3.842e-4772.2250S ribosomal protein L11, chloroplastic OS=Guilla... [more]
RL11_SYNR36.553e-4772.2250S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_PROMM6.553e-4773.8150S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_PROM56.553e-4773.0250S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_THEEB1.118e-4670.6350S ribosomal protein L11 OS=Thermosynechococcus e... [more]
RL11_SYNS31.118e-4672.2250S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_SYNPW1.118e-4673.8150S ribosomal protein L11 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246K03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246K03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403905 ID=DR403905; Name=DR403905; organism=Citrus sinensis; type=EST; length=766bp
GGGGAGATTCAGTGGATTCGAGGTTCAATGGCTTCCTCTCTATCCACTTC
AACGAGTCTTCAAAATACTAATCAGCAGCTTTCGTGCTCTTTATTTCCTT
CAGCCGTCAACTTATCCTCAAACTCTAATGTCTCCCTCCCATTTTACGAC
AATAGAGTTAAACCATCCCCACTCCTCTCTTCAACTCCAAGATTTCTCAC
TGTCATTGCCATGGCTCCTCCTAAACTCGGTGGCAAAGCAAAAGCCAAGA
AAGTGGTGGGTTTGATAAAGCTGGCTCTAGAGGCAGGAAAGGCCACACCT
GCGCCGCCCGTGGGGCCAGCCCTTGGTGCTAAGGGTGTAAATATCATGGC
TTTTTGTAAGGATTATAATGCTAGAACTGCTGATAAAGCCGGTTACGTTA
TTCCAGTCGAAATTACTGTTTACGATGATAGGAGCTTCACTTTTATTCTT
AAGACGCCGCCCGCGTCAGTTTTGCTCCTTAAGGCTGCTGGGGTGGAGAA
GGGTTCAAAAGATCCAAAGCAACAGAAAGTGGGGAAGATCACCATTGAAC
AATTGCGGGCCATTGCCACGGAAAAGCTTCCAGATTTGAATTGCACTTCT
ATTGAATCAGCAATGAGAATTATAGCAGGTACTGCGGCTAACATGGGTAT
TGATATTGACCCTCCAGTTCTTGGGACCAAAAAGAAGGAACTTTGATTAT
TTCATTGTTGCCTTGATTTTGNNNNAGTTGTGGGGTTTAGCAGTCGCTTC
AAAGTTCATGATGTAC
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