DR403896

Overview
NameDR403896
Unique NameDR403896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403896_ssr9 microsatellite DR403896_ssr9:9..20. BLAST: Citrus ESTs to Prunus persica proteins V1
DR403896_ssr30 microsatellite DR403896_ssr30:30..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6138 contig Csv1_Contig6138:1..545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR403896 vs. ExPASy Swiss-Prot
Match: Y4095_ARATH (Uncharacterized protein At4g00950 OS=Arabidopsis thaliana GN=At4g00950 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.272e-18
Identity = 63/148 (42.57%), Postives = 80/148 (54.05%), Query Frame = 2 
Query:   62 EAMDEGQSSTLKLPLFSI---TARASMQSPERPGMLTPPLRTSASVPFRWEEEPGKPKPCTTVITLPDTSK--TDFS------HKCLELPPRLLIMDXXXXXXXXITKLSSPTTVLEGPY-VARSSRFQTPSFRM----SSECYGSFR 457
            E   EG  + +KLP+      T   SM SP    +       SASVPF WEEEPGKPK  +T  +   +S   T +S      HK LELPPRL +++        +TKL SP TV +GPY +  S R  +PSFRM    S++CYGSFR
Sbjct:    6 ETEQEGNLTVMKLPVLPTKPNTHSHSMSSPIHSSI-------SASVPFSWEEEPGKPKQHSTSSSSSSSSSPLTSYSSSPFETHKSLELPPRLHLLE---KDGGSVTKLHSPITVFDGPYSMTTSKRMDSPSFRMMVKGSADCYGSFR 143
The following BLAST results are available for this feature:
BLAST of DR403896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4095_ARATH3.272e-1842.57Uncharacterized protein At4g00950 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246J18 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246J18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403896 ID=DR403896; Name=DR403896; organism=Citrus sinensis; type=EST; length=545bp
GGGGGAGTGAGAGAGAGAGATTGAGTGAGAGAAGAAGAAGAAGACCATGT
GGCNNNNTTCTGAAGCGATGGATGAAGGGCAAAGCTCAACGCTAAAGCTA
CCACTTTTTTCAATAACAGCAAGAGCAAGTATGCAGTCACCAGAGAGGCC
TGGAATGCTAACCCCACCACTTCGGACTTCAGCTTCGGTCCCATTTCGAT
GGGAAGAAGAGCCTGGCAAGCCCAAGCCTTGCACCACTGTCATCACTCTG
CCAGACACGTCGAAAACTGATTTTTCTCACAAGTGTTTAGAGTTGCCTCC
AAGGCTTTTGATCATGGATGCTGCTAATGCTAATGCTAATAATATTACCA
AACTGTCCTCACCCACCACTGTTCTTGAAGGTCCTTATGTGGCTCGGTCG
TCTAGGTTTCAGACTCCTTCGTTTAGAATGAGTAGTGAGTGTTATGGGTC
TTTTCGTGGGAGTACTTTAAGTCCTGAACATAAAAATAAAAAAGATAGTG
ATGAGTTTGGTGTTGTGGTGCTTAGTAATAGTAAGATCGTGAAGA
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