DR403894

Overview
NameDR403894
Unique NameDR403894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: PAT1_ARATH (Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.429e-26
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK 246
            RD+VN++ CEG +RVERH  LGKWRSRF MAGFTPY LSPLV + ++ +L++Y   YR+EE DGALYLGW +R +  S AWK
Sbjct:  409 RDVVNIIACEGADRVERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLLRNYSDKYRLEERDGALYLGWMHRDLVASCAWK 490          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: SCL21_ARATH (Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.815e-25
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK 246
            RD+VN++ CEG ER+ERH  LGKW+SRF MAGF PY LS +++  +R +L+DY + Y +EE DGALYLGW +R + +S AWK
Sbjct:  332 RDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAIEERDGALYLGWMDRILVSSCAWK 413          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.514e-23
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK 246
            R++VN++ CEG+ER ERH  LGKWRSRF MAGF PY LS  V   ++ +L+ Y   Y +EE DGALYLGW+N+ + TS AW+
Sbjct:  516 REVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEKYTLEERDGALYLGWKNQPLITSCAWR 597          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.525e-20
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAW 243
            R+IVN++ CEG ER ER+   GKW++R  MAGF P  LS LV   +R +L+ Y  NY++ E DGALYLGW++R +  SSAW
Sbjct:  463 REIVNLIACEGEERAERYEPFGKWKARLTMAGFRPSPLSSLVNATIRTLLQSYSDNYKLAERDGALYLGWKSRPLVVSSAW 543          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.525e-20
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAW 243
            +DIVN++ CEG +RVERH  LGKW+SR  MAGF PY LS  V + +R +L  Y   Y ++E DGA+ LGWR+R + ++SAW
Sbjct:  490 KDIVNIIACEGKDRVERHELLGKWKSRLTMAGFRPYPLSSYVNSVIRKLLACYSDKYTLDEKDGAMLLGWRSRKLISASAW 570          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLK-DYDSNYRVEENDGALYLGWRNRAMATSSAWK 246
            RDIVN++ CEG ER+ER+   GKWR+R MMAGF P  +S  VTN +++++K  Y + Y+++E  G L+  W  +++  +SAW+
Sbjct:  511 RDIVNIVACEGEERIERYEAAGKWRARMMMAGFNPKPMSAKVTNNIQNLIKQQYCNKYKLKEEMGELHFCWEEKSLIVASAWR 593          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: GAIP_CUCMA (DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.080e-13
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDS--NYRVEENDGALYLGWRNRAMATSSAWK 246
            + I N++ CEG +RVERH  L +WR+R   AGF P  L          +L  + S   YRVEEN+G+L LGW  R +  +SAWK
Sbjct:  487 KQICNVVACEGADRVERHETLTQWRTRLSSAGFDPIHLGSNAFKQASILLALFGSGEGYRVEENEGSLMLGWHTRPLIATSAWK 570          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: RGL2_ARATH (DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.254e-13
Identity = 37/84 (44.05%), Postives = 48/84 (57.14%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSN--YRVEENDGALYLGWRNRAMATSSAWK 246
            R I+N++  EG +RVERH    +WR R   AGF P  L          +L  Y +   YRVEENDG L +GW+ R + T+SAWK
Sbjct:  462 RQILNVVAAEGSDRVERHETAAQWRIRMKSAGFDPIHLGSSAFKQASMLLSLYATGDGYRVEENDGCLMIGWQTRPLITTSAWK 545          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: DWRF8_MAIZE (DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.254e-13
Identity = 37/84 (44.05%), Postives = 46/84 (54.76%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDY--DSNYRVEENDGALYLGWRNRAMATSSAWK 246
            R I N++ CEG ER ERH  LG+WRSR   +GF P  L          +L  +     YRVEE DG L LGW  R +  +SAW+
Sbjct:  540 RQICNVVACEGAERTERHETLGQWRSRLGGSGFAPVHLGSNAYKQASTLLALFAGGDGYRVEEKDGCLTLGWHTRPLIATSAWR 623          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: RGL1_ARATH (DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.862e-13
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDY--DSNYRVEENDGALYLGWRNRAMATSSAWK 246
            R I+N++ CEG +RVERH  L +WR+RF + GF P  +          +L  Y     Y VEEN+G L LGW+ R +  +SAW+
Sbjct:  423 RQILNLVACEGEDRVERHETLNQWRNRFGLGGFKPVSIGSNAYKQASMLLALYAGADGYNVEENEGCLLLGWQTRPLIATSAWR 506          
The following BLAST results are available for this feature:
BLAST of DR403894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PAT1_ARATH2.429e-2662.20Scarecrow-like transcription factor PAT1 OS=Arabid... [more]
SCL21_ARATH7.815e-2557.32Scarecrow-like protein 21 OS=Arabidopsis thaliana ... [more]
SCL5_ARATH2.514e-2356.10Scarecrow-like protein 5 OS=Arabidopsis thaliana G... [more]
CIGR2_ORYSJ1.525e-2053.09Chitin-inducible gibberellin-responsive protein 2 ... [more]
CIGR1_ORYSJ1.525e-2053.09Chitin-inducible gibberellin-responsive protein 1 ... [more]
SCL1_ARATH5.077e-1644.58Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]
GAIP_CUCMA3.080e-1344.05DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=... [more]
RGL2_ARATH5.254e-1344.05DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2... [more]
DWRF8_MAIZE5.254e-1344.05DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1[more]
RGL1_ARATH6.862e-1341.67DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246J15 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246J15 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403894 ID=DR403894; Name=DR403894; organism=Citrus sinensis; type=EST; length=537bp
CGGGACATAGTCAACATGCTATTTTGTGAGGGGATTGAAAGGGTGGAACG
GCATGANNTTCTTGGTAAGTGGAGATCACGTTTTATGATGGCAGGATTTA
CCCCATATCGATTGAGTCCTTTGGTGACAAATGCTGTGAGGGATGTATTG
AAAGACTATGATAGTAACTATAGAGTTGAAGAGAATGATGGGGCTCTTTA
TCTCGGCTGGAGAAACAGAGCTATGGCCACCTCTTCTGCATGGAAGTGAA
AAACCATTATAGAAACTCTGTATAATTAACCCCCACAGTTTTTGTTGTAG
CTTTTAGAGCACGAGTCATAGTGATATTTGTTAGTTGTAACTTAATAGAA
CGGAGAGTAGCTGTCAATTATCATCTAATAGAACCTCAACTTTACTGTAA
ATGTCCACGTTGTAATATGATAAGCAGACAGGTCTGAATTTTACTGAACT
TACGGTGTTATAACGTTTGTGTTTCTTGGTTACTAAATGAAGGAAAAAAA
TTTCTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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