DR403870

Overview
NameDR403870
Unique NameDR403870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403870 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 5.512e-100
Identity = 171/192 (89.06%), Postives = 182/192 (94.79%), Query Frame = 3
Query:  120 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLVGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADD 689
            F GKAV L+PS +E++  GR++MRKTA+K+   SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL+GAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADD
Sbjct:   13 FAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADD 204          
BLAST of DR403870 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 7.199e-100
Identity = 170/192 (88.54%), Postives = 183/192 (95.31%), Query Frame = 3
Query:  120 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLVGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADD 689
            F GKAV L+PS +E++  G+++MRKTASK+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL+GAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+D
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAED 204          
BLAST of DR403870 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 9.402e-100
Identity = 170/192 (88.54%), Postives = 183/192 (95.31%), Query Frame = 3
Query:  120 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLVGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADD 689
            F GKAV L+PS +E++  G+++MRKTASK+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL+GAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+D
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAED 203          
BLAST of DR403870 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 4.666e-99
Identity = 168/190 (88.42%), Postives = 178/190 (93.68%), Query Frame = 3
Query:  120 FVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLVGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADD 689
            F G+AV L+PS +E+S  GRI+MRK  +KS  S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL+GAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+D
Sbjct:   13 FAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAED 202          
BLAST of DR403870 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 4.666e-99
Identity = 166/190 (87.37%), Postives = 179/190 (94.21%), Query Frame = 3
Query:  120 FVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLVGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADD 689
            F G+AV L+PS  E++  GR+SMRKT +K V+S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+L+GAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+D
Sbjct:   13 FAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAED 202          
BLAST of DR403870 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 4.666e-99
Identity = 168/188 (89.36%), Postives = 179/188 (95.21%), Query Frame = 3
Query:  126 GKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLVGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADD 689
            G+AV L+P+  E+    + +MRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL+GAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADD
Sbjct:    5 GQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADD 192          
BLAST of DR403870 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.040e-98
Identity = 167/192 (86.98%), Postives = 182/192 (94.79%), Query Frame = 3
Query:  120 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLVGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADD 689
            F GKAV L+PS +E++  G+++MRKT +K+  +SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL+GAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+D
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAED 204          
BLAST of DR403870 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.358e-98
Identity = 168/192 (87.50%), Postives = 180/192 (93.75%), Query Frame = 3
Query:  120 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLVGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADD 689
            F G AV L+PS +E++  G+  MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL+GA+EGYR+AGGPLGEVTDPLYPGGSFDPLGLADD
Sbjct:   13 FAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADD 204          
BLAST of DR403870 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 1.773e-98
Identity = 168/192 (87.50%), Postives = 182/192 (94.79%), Query Frame = 3
Query:  120 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLVGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADD 689
            F GKAV L+PS +E++  G+++MRKTA+K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL+GAVEGYR+AG PLGEV DPLYPGGSFDPLGLA+D
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAED 203          
BLAST of DR403870 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.149e-97
Identity = 167/192 (86.98%), Postives = 179/192 (93.23%), Query Frame = 3
Query:  120 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLVGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADD 689
            F GKAV  +PS +E++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL+GAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADD
Sbjct:   13 FAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADD 204          
The following BLAST results are available for this feature:
BLAST of DR403870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2G_SOLLC5.512e-10089.06Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_TOBAC7.199e-10088.54Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC9.402e-10088.54Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2B_SOLLC4.666e-9988.42Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB22_TOBAC4.666e-9987.37Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_CUCSA4.666e-9989.36Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_TOBAC1.040e-9886.98Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB27_TOBAC1.358e-9887.50Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_NICPL1.773e-9887.50Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB25_PETSP1.149e-9786.98Chlorophyll a-b binding protein 91R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246I12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246I12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403870 ID=DR403870; Name=DR403870; organism=Citrus sinensis; type=EST; length=690bp
ACGGCCGGGGATCACAACCAACAGCTNNNNTTGCTTACACAGCTTCTCTT
GCTTACCCAGCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAAC
AATGGCTCTCTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTT
CAGGCAATGAGCTAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGCG
AGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCAGACAGAGTCAA
GTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGT
TCCCTGGCGACTACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAA
ACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCAT
GTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAG
TCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGAGCCCAGATCTTCAGC
GAGGGCGGGCTAGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAG
CATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGGTGGGAGCCGTTGAGG
GTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTAC
CCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACC
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