DR403861

Overview
NameDR403861
Unique NameDR403861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403861_ssr88 microsatellite DR403861_ssr88:88..103. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6065 contig Csv1_Contig6065:144..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR403861 vs. ExPASy Swiss-Prot
Match: UBQL_DICDI (Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 2 
Query:  257 NIRCSNGTKFSVDIDLESSVETFKAALAEKCEVPPQQQRLIYKGRILKDDQTLKSYGLEADHTVHLVRG 463
            NI+ S   KF VD++L  +V  FK  +A KC +P  QQR+IY GRILKD QTL    ++  HTVHLV+G
Sbjct:    5 NIKSSTDNKFDVDVELGITVADFKKVIATKCSIPADQQRIIYSGRILKDHQTLDEIKIQDGHTVHLVKG 73
[Close]
BLAST of DR403861 vs. ExPASy Swiss-Prot
Match: DSK2_SCHPO (Deubiquitination-protection protein dph1 OS=Schizosaccharomyces pombe GN=dph1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 29/67 (43.28%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  260 IRCSNGTKFSVDIDLESSVETFKAALAEKCEVPPQQQRLIYKGRILKDDQTLKSYGLEADHTVHLVR 460
            I+ +N  K++V +D ESSV   K A+A   ++  ++QRLIY GR+LKD+++LK+Y ++  H++HLV+
Sbjct:    8 IKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVK 74
The following BLAST results are available for this feature:
BLAST of DR403861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBQL_DICDI5.885e-1452.17Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=... [more]
DSK2_SCHPO4.663e-1143.28Deubiquitination-protection protein dph1 OS=Schizo... [more]
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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246I01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246I01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403861 ID=DR403861; Name=DR403861; organism=Citrus sinensis; type=EST; length=679bp
GGGGGATTCCCTCATACATACTAATTTCGTTTTTTTTTCCTCTCTTTCTA
TGATNNNATTTCGATTTATTAATATATACTAATATAGAAATAAATAAATA
AATATTTTTTAAAGGGTTAGGGTTTCGTAAATTTGATCGATCGGCTTGCT
TTTTGTTTTATTTATTTTCAAAGTTGTTGGATTCGTTGGGCCTCCGGCAG
GGATGGGGGCTGGAGATGAGGTAAGCGAATCGAGCGGAGGAGAGGGAGTA
AAGGTGAATATCCGATGCTCGAACGGCACAAAATTTTCGGTGGATATCGA
TCTGGAATCCAGCGTTGAAACATTCAAAGCGGCGTTGGCGGAAAAGTGCG
AGGTTCCGCCTCAGCAACAGCGGTTGATTTATAAAGGTCGGATCTTGAAG
GACGATCAAACCCTCAAAAGCTATGGTTTGGAGGCAGATCACACTGTGCA
CTTGGTTCGTGGTTTTGCACCTGCTGCATCTACAAACAATGCTGCGCCAA
CCAACTCTGGAGGTTCAACTACTACTCCAAACAGCACAAGGCCCGTGAGT
ACTAATGAAGGTGATGCTCTTGGAGGAGCTGGTCTTGGAGCTTCTCTGTT
TCCTGGACTTGGCATCAATGGTTTAGGTGGCAGCGGAGGTGGTTTGTTTG
GAGCTGGACTTCCAGAATTTGAACAAGTG
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