DR403860

Overview
NameDR403860
Unique NameDR403860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1740 contig Csv1_Contig1740:10..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR403860 vs. ExPASy Swiss-Prot
Match: UMP6_ARATH (Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.295e-47
Identity = 91/143 (63.64%), Postives = 113/143 (79.02%), Query Frame = 1 
Query:  223 DCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYLRKKVE 651
            D +    M +G  R FSEDV+HMP + D ++  AFKDLMAADW ELP++V+ DAK+A+S+N DDKAGQE LKNVF AAEAVEEF GI+ +IKME DD IG+SGE VKPL N+++ A+RT YQRYA YLD+F P+E YL+KKVE
Sbjct:   74 DLQYPRAMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEVYLKKKVE 216
The following BLAST results are available for this feature:
BLAST of DR403860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UMP6_ARATH1.295e-4763.64Uncharacterized protein At1g47420, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246H24 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246H24 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403860 ID=DR403860; Name=DR403860; organism=Citrus sinensis; type=EST; length=652bp
GCCGGGGGAAAACCCACAAGAGACTTTTGNNNNANNNNCGCAGCGAGAGA
AANNNNGAAGATAGCAGTTTTGAGTGTCAGATCCATACGGCAAGCAGCGN
NCGTCAGATCTTCACTAATAGCCGCCGCCAACAACCATCATCTCTGCCAC
TTGTCGTCTTCTCGATCGCTCTTCNNNTTATCTTCACCTGCTGCTTCGAT
TCCTTCCAAATCCATCCCTTTTGATTGCCGGTCTTCTCTTGTGATGAGCA
TAGGATGCAACCGTTCTTTCAGTGAAGATGTTGCTCACATGCCTGTAATA
AGAGACCCTGAAATTCAGCGTGCTTTCAAGGACTTGATGGCTGCAGACTG
GGGTGAGCTTCCTGCTTCTGTCATCCATGATGCAAAGAGTGCGTTGTCCA
GAAATAATGATGACAAGGCTGGCCAGGAGGTCTTGAAAAATGTTTTCAGT
GCTGCTGAAGCAGTTGAGGAATTCATTGGGATTATTATGAACATTAAAAT
GGAATTTGATGATGAAATTGGGCTAAGTGGTGAGAATGTAAAACCCTTGT
CAAATGAATTATCCTCTGCAATTCGTACAGTTTATCAACGTTATGCTACC
TACTTGGATGCATTTGGCCCTGATGAATCCTATCTGCGGAAGAAGGTAGA
AA
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