CX069459

Overview
NameCX069459
Unique NameCX069459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4283 contig Csv1_Contig4283:1..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069459 vs. ExPASy Swiss-Prot
Match: GAT27_ARATH (GATA transcription factor 27 OS=Arabidopsis thaliana GN=TIFY2B PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.748e-37
Identity = 88/182 (48.35%), Postives = 112/182 (61.54%), Query Frame = 1
Query:    1 LTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSASNGSKLS--QRIASLVXXXXXXXXXXXXXXIRYSCRKEVAQRMQRKNGQFTSSKA-------TFNIXXXXXXXXXXXXXXXXVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 519
            LT++++G+VYVF  V+P KVQA+LLLLG  ++P T+P++  +  QN    G +    +LS  QR+ASL+              IRY+ RKEVA RMQRK GQFTS+K+       T +                    +C+HCG SEK TP MRRGP GPRTLCNACGLMWANKGTLRDL+K
Sbjct:   80 LTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSK 261          
BLAST of CX069459 vs. ExPASy Swiss-Prot
Match: GAT25_ARATH (GATA transcription factor 25 OS=Arabidopsis thaliana GN=TIFY2A PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.217e-35
Identity = 90/207 (43.48%), Postives = 113/207 (54.59%), Query Frame = 1
Query:    1 LTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQN--IMSGGSASNGSKLSQRIASLVXXXXXXXXXXXXXXIRYSCRKEVAQRMQRKNGQFTSSKATFNIXXXXXXXXXXXXXXXXVSR-------ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKG----GRNICFEQHE---LETSSDI 573
            LT++++G+VYVF +V P KVQA+LLLLG  ++P   P    +  QN  + S         + QR+ASLV              IRY+ RKEVA RMQR  GQFTS+K+  +                  S         C+HCGI EK TP MRRGPAGPRTLCNACGLMWANKG  RDL+K      +N+   ++E   LET   I
Sbjct:   84 LTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLSKASPQTAQNLPLNKNEDANLETDHQI 290          
BLAST of CX069459 vs. ExPASy Swiss-Prot
Match: GAT26_ARATH (GATA transcription factor 26 OS=Arabidopsis thaliana GN=TIFY1 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.288e-29
Identity = 79/174 (45.40%), Postives = 91/174 (52.30%), Query Frame = 1
Query:    1 LTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPS-SAFAQPQNIMSGGSASNGSKLSQRIASLVXXXXXXXXXXXXXXIRYSCRKEVAQRMQRKNGQFTSSKATFNIXXXXXXXXXXXXXXXXVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 519
            LT+++ G+VYVF AV   KV A+L LLG     +  P     AQ QN M      +   L QR  SL               +RY  R+EVA RM R  GQFTSSK T                       C HCGIS K TP MRRGP+GPRTLCNACGL WAN+GTLRDL+K
Sbjct:   84 LTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTDGAYNSGTDQDSAQDDAHPEIS-CTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSK 256          
The following BLAST results are available for this feature:
BLAST of CX069459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GAT27_ARATH1.748e-3748.35GATA transcription factor 27 OS=Arabidopsis thalia... [more]
GAT25_ARATH6.217e-3543.48GATA transcription factor 25 OS=Arabidopsis thalia... [more]
GAT26_ARATH2.288e-2945.40GATA transcription factor 26 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_10E12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10E12-I24-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069459 ID=CX069459; Name=CX069459; organism=Citrus sinensis; type=EST; length=804bp
CTCACCGTAGCCTACGAGGGCGAGGTCTATGTGTTCCCTGCAGTCACTCC
TCATAAGGTGCAAGCATTGCTATTACTACTGGGAGAGTGTGACATTCCTT
CTACTGTTCCCAGCTCAGCTTTTGCGCAACCACAAAACATTATGAGTGGT
GGCAGTGCCTCCAATGGCTCAAAGCTTTCACAAAGAATTGCTTCTTTGGT
GAGGTTTCGTGAAAAACGAAAAGAAAGAAGCTTTGAAAAAAAAATTCGGT
ATAGTTGTAGGAAAGAGGTTGCTCAGAGAATGCAACGTAAAAATGGACAG
TTCACATCATCAAAGGCGACTTTTAACATAGCTTCTGCCAATTCAAATCC
AAGCAATGGCAGTGCCCCTCCTGAATCCGTCTCGCGAATATGTCAACACT
GTGGGATAAGTGAGAAGTTGACTCCAGCAATGCGTAGGGGGCCAGCTGGT
CCAAGAACTCTTTGCAATGCATGTGGCCTTATGTGGGCGAACAAGGGAAC
CTTGAGAGATCTTACAAAAGGGGGAAGGAATATTTGTTTCGAACAACATG
AGCTGGAAACTTCTAGTGATATTAAGCCTGCAACAACAGAAGCAGAAAAT
TCTTATGCCAACCAAGATGAACAGGGAAGTCCACACGAGACAAAGCCTGC
ACCCTTGGATCCTCAAAATCATTCCATGAGGTCAAATGAGCAGTACTTGC
TGGAAAGTGATGATGGTTTTGCATGTCCTTTGCCCATTCAAGAAGACAAC
TCATTGATGAACCTTGATGACGAGGACTTGCAGGAAGCTATGGATGAGCT
TGCC
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