CX069456

Overview
NameCX069456
Unique NameCX069456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069456_ssr531 microsatellite CX069456_ssr531:531..542. BLAST: Citrus ESTs to Populus V2 proteins
Csv1_Contig3838 contig Csv1_Contig3838:104..946. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX069456 vs. ExPASy Swiss-Prot
Match: ATP6_OENBE (ATP synthase subunit a OS=Oenothera bertiana GN=ATP6 PE=2 SV=2)

HSP 1 Score: 300.442 bits (768), Expect = 8.049e-81
Identity = 152/174 (87.36%), Postives = 154/174 (88.51%), Query Frame = 1
Query:    1 LSGNVKQKFFPCILVTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXXISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 522
            LSGNVKQKFFPCILVTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLS                    ISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMN++FYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH
Sbjct:  108 LSGNVKQKFFPCILVTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNDLFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 281          
BLAST of CX069456 vs. ExPASy Swiss-Prot
Match: ATP62_ARATH (ATP synthase subunit a-2 OS=Arabidopsis thaliana GN=ATP6-2 PE=2 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 5.399e-77
Identity = 147/174 (84.48%), Postives = 149/174 (85.63%), Query Frame = 1
Query:    1 LSGNVKQKFFPCILVTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXXISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 522
            LSGNVKQ FFPCILVTF FLLFCNLQGMIPYSFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                    ISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMN+IFYFIG LGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH
Sbjct:  176 LSGNVKQMFFPCILVTFLFLLFCNLQGMIPYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 349          
BLAST of CX069456 vs. ExPASy Swiss-Prot
Match: ATP61_ARATH (ATP synthase subunit a-1 OS=Arabidopsis thaliana GN=ATP6-1 PE=2 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 5.399e-77
Identity = 147/174 (84.48%), Postives = 149/174 (85.63%), Query Frame = 1
Query:    1 LSGNVKQKFFPCILVTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXXISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 522
            LSGNVKQ FFPCILVTF FLLFCNLQGMIPYSFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                    ISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMN+IFYFIG LGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH
Sbjct:  212 LSGNVKQMFFPCILVTFLFLLFCNLQGMIPYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 385          
BLAST of CX069456 vs. ExPASy Swiss-Prot
Match: ATP6_BRANA (ATP synthase subunit a OS=Brassica napus GN=ATP6 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 7.051e-77
Identity = 147/174 (84.48%), Postives = 148/174 (85.06%), Query Frame = 1
Query:    1 LSGNVKQKFFPCILVTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXXISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 522
            LSGNVKQ FFPCILVTF FLLFCNLQGMIPYSFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                    ISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMN IFYFIG LGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH
Sbjct:   87 LSGNVKQMFFPCILVTFLFLLFCNLQGMIPYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNEIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 260          
BLAST of CX069456 vs. ExPASy Swiss-Prot
Match: ATP6_VICFA (ATP synthase subunit a OS=Vicia faba GN=ATP6 PE=3 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.018e-75
Identity = 146/181 (80.66%), Postives = 151/181 (83.43%), Query Frame = 1
Query:    1 LSGNVKQKFFPCILVTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXXISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH*SGYLFI 543
            LSGNVKQ+FFPCI VTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLS                    ISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMN++ YFIGDLGPLFIVLALTG ELGVAI QA+V TI ICIYLNDA NLH +  LFI
Sbjct:  109 LSGNVKQQFFPCIFVTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNDLLYFIGDLGPLFIVLALTGPELGVAISQAHVSTISICIYLNDATNLHQTCLLFI 289          
BLAST of CX069456 vs. ExPASy Swiss-Prot
Match: ATP6_TOBAC (ATP synthase subunit a OS=Nicotiana tabacum GN=ATP6 PE=3 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.962e-75
Identity = 148/187 (79.14%), Postives = 152/187 (81.28%), Query Frame = 1
Query:    1 LSGNVKQKFFPCILVTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXXISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH*SGYLFIIEQKRV 561
            LSGNVKQKF P I VTFTF LFCN QGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQ+NGLHFLS                    I YCFRALS GIRLFANMMAGHS VKILSGFAWTMLCMN++ YFIGDLGPLFIVLALTGLELGVAI QA+V TILICIYLNDAINLH S   FIIEQKRV
Sbjct:  209 LSGNVKQKFSPRISVTFTFSLFCNPQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQKNGLHFLSFLLPAGVPLPLAPFLVLLELIPYCFRALSSGIRLFANMMAGHSSVKILSGFAWTMLCMNDLLYFIGDLGPLFIVLALTGLELGVAISQAHVSTILICIYLNDAINLHQSASFFIIEQKRV 395          
BLAST of CX069456 vs. ExPASy Swiss-Prot
Match: ATP6_WHEAT (ATP synthase subunit a OS=Triticum aestivum GN=ATP6 PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.429e-69
Identity = 138/174 (79.31%), Postives = 142/174 (81.61%), Query Frame = 1
Query:    1 LSGNVKQKFFPCILVTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXXISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 522
            LSGNVKQKFFP I VTFTF LF N QGMIP+SFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                    ISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTML +NNIFYFIGDLGPLFIVLALTGLELGVAI QA+V TI ICIYLNDA NLH
Sbjct:  206 LSGNVKQKFFPRISVTFTFSLFRNPQGMIPFSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLFLNNIFYFIGDLGPLFIVLALTGLELGVAISQAHVSTISICIYLNDATNLH 379          
BLAST of CX069456 vs. ExPASy Swiss-Prot
Match: ATP6_TRITI (ATP synthase subunit a OS=Triticum timopheevi GN=ATP6 PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.429e-69
Identity = 138/174 (79.31%), Postives = 142/174 (81.61%), Query Frame = 1
Query:    1 LSGNVKQKFFPCILVTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXXISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 522
            LSGNVKQKFFP I VTFTF LF N QGMIP+SFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                    ISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTML +NNIFYFIGDLGPLFIVLALTGLELGVAI QA+V TI ICIYLNDA NLH
Sbjct:  206 LSGNVKQKFFPRISVTFTFSLFRNPQGMIPFSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLFLNNIFYFIGDLGPLFIVLALTGLELGVAISQAHVSTISICIYLNDATNLH 379          
BLAST of CX069456 vs. ExPASy Swiss-Prot
Match: ATP6_MAIZE (ATP synthase subunit a OS=Zea mays GN=ATP6 PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.983e-68
Identity = 134/174 (77.01%), Postives = 140/174 (80.46%), Query Frame = 1
Query:    1 LSGNVKQKFFPCILVTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXXISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 522
            LSGNVK KFFPCI VTFTF LF N QGMIP+SFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                    IS+CFRALS GIRLFANMMAGHS VKILSGFAWTML +NNIFYF+GDLGPLFIVLALTGLELGVAI QA+V TI ICIYLNDA NLH
Sbjct:  103 LSGNVKHKFFPCISVTFTFSLFRNPQGMIPFSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISHCFRALSSGIRLFANMMAGHSSVKILSGFAWTMLFLNNIFYFLGDLGPLFIVLALTGLELGVAISQAHVSTISICIYLNDATNLH 276          
BLAST of CX069456 vs. ExPASy Swiss-Prot
Match: ATP6_MARPO (ATP synthase subunit a OS=Marchantia polymorpha GN=ATP6 PE=3 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 3.283e-66
Identity = 130/173 (75.14%), Postives = 138/173 (79.77%), Query Frame = 1
Query:    4 SGNVKQKFFPCILVTFTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXXISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 522
            + +VKQ+FFP I VTFTFLLFCNL GMIPYSFTVTSHF+ITLGLSFS+FIGITIVGFQ +GLHF S                    ISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTML M  I Y +G L P FIV ALTGLELGVAILQAYVFTIL+CIYLNDAINLH
Sbjct:   81 ASSVKQRFFPLIYVTFTFLLFCNLIGMIPYSFTVTSHFIITLGLSFSLFIGITIVGFQTHGLHFFSILLPQGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLSMGGILY-LGQLAPFFIVFALTGLELGVAILQAYVFTILLCIYLNDAINLH 252          
The following BLAST results are available for this feature:
BLAST of CX069456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
ATP6_OENBE8.049e-8187.36ATP synthase subunit a OS=Oenothera bertiana GN=AT... [more]
ATP62_ARATH5.399e-7784.48ATP synthase subunit a-2 OS=Arabidopsis thaliana G... [more]
ATP61_ARATH5.399e-7784.48ATP synthase subunit a-1 OS=Arabidopsis thaliana G... [more]
ATP6_BRANA7.051e-7784.48ATP synthase subunit a OS=Brassica napus GN=ATP6 P... [more]
ATP6_VICFA1.018e-7580.66ATP synthase subunit a OS=Vicia faba GN=ATP6 PE=3 ... [more]
ATP6_TOBAC2.962e-7579.14ATP synthase subunit a OS=Nicotiana tabacum GN=ATP... [more]
ATP6_WHEAT2.429e-6979.31ATP synthase subunit a OS=Triticum aestivum GN=ATP... [more]
ATP6_TRITI2.429e-6979.31ATP synthase subunit a OS=Triticum timopheevi GN=A... [more]
ATP6_MAIZE5.983e-6877.01ATP synthase subunit a OS=Zea mays GN=ATP6 PE=3 SV... [more]
ATP6_MARPO3.283e-6675.14ATP synthase subunit a OS=Marchantia polymorpha GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10E09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10E09-I18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069456 ID=CX069456; Name=CX069456; organism=Citrus sinensis; type=EST; length=843bp
CTTTCCGGAAATGTGAAACAAAAGTTTTTCCCTTGCATCTTGGTCACTTT
TACTTTTTTGTTATTTTGTAATCTCCAGGGTATGATACCTTATAGCTTCA
CAGTTACAAGCCATTTTCTCATTACTTTGGGTCTCTCATTTTCCATTTTT
ATTGGCATTACTATAGTGGGATTTCAAAGAAATGGGCTTCATTTTTTAAG
CTTCTTCTTACCTGCAGGAGTCCCACTGCCGTTAGCGCCTTTTTTAGTAC
TCCTTGAGCTAATCTCTTATTGTTTTCGCGCATTAAGCTTAGGAATACGT
TTATTTGCTAATATGATGGCCGGTCATAGTTTAGTAAAGATTTTAAGTGG
GTTCGCTTGGACTATGCTATGTATGAATAATATTTTCTATTTCATAGGGG
ATCTTGGTCCTTTATTTATAGTTCTTGCATTAACCGGCCTGGAATTAGGT
GTAGCTATATTACAAGCTTATGTTTTTACGATCTTAATCTGTATTTACTT
GAATGATGCTATAAATCTCCATTAAAGTGGTTATTTATTTATAATTGAAC
AAAAGCGAGTCTGAATGGGTATACTTAGTCGTGGAGCATTCCGAGTATTT
GCTTTAGGGATCGTTCCTGCGCATCTGCTTCCTTTATAGCAATTATTGCT
CCGGTTCCAGAAGGTATAGCTCTTGCCTCGACTTCTGCTTCTTTGCTTTT
GCACTAGGTCCGGCCCTGCTACCGCTGCTTGCTCGATGCCATCCCAGCAC
GGCTACTAAGTTAGGTTAGTCTTCTGAGTGCAGTGAAGAGGCTCTTCCAA
GAGAGGCCCAACTAACGGTAACCATCGAATGATCTTCTTAACG
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