DR403854

Overview
NameDR403854
Unique NameDR403854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:223..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR403854 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.457e-29
Identity = 65/123 (52.85%), Postives = 80/123 (65.04%), Query Frame = 2 
Query:   53 LXMLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 421
            + +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    1 MVLLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of DR403854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN5.457e-2952.85Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246H17 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246H17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403854 ID=DR403854; Name=DR403854; organism=Citrus sinensis; type=EST; length=549bp
GGGGACTGAAGAAGAGGTCAATTATTTAGAAACTAGCAGCTAAATTGTAA
ATTTANNGATGCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCTCAG
CCTGATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGC
AGTCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGT
CTCTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCG
ACGACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCA
CCCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACA
AGCCCACACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAGTGGG
GAGACTAGGAGCAAGCATCATCACTGAGTGGATGATACGCTCCAGCGATG
TAAATGAATGTGATGGGTCACCAACTCACCGGATGAGTTGCCCTGTAGTC
TGTAGATAGTGTCGTTTCGTTTTGGATTTCGCAACGTGTCCTTGTCGTT
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