CX069455

Overview
NameCX069455
Unique NameCX069455
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069455_ssr405 microsatellite CX069455_ssr405:405..416. BLAST: Citrus ESTs to Populus V2 proteins
Csv1_Contig3838 contig Csv1_Contig3838:1..888. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX069455 vs. ExPASy Swiss-Prot
Match: ATP6_OENBE (ATP synthase subunit a OS=Oenothera bertiana GN=ATP6 PE=2 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 1.308e-68
Identity = 133/154 (86.36%), Postives = 135/154 (87.66%), Query Frame = -3
Query:  425 LFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 886
            LFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLS                   LISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMN++FYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH
Sbjct:  128 LFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNDLFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 281          
BLAST of CX069455 vs. ExPASy Swiss-Prot
Match: ATP6_TOBAC (ATP synthase subunit a OS=Nicotiana tabacum GN=ATP6 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 9.372e-67
Identity = 133/167 (79.64%), Postives = 137/167 (82.04%), Query Frame = -3
Query:  386 LFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH*SGYLFIIEQKRV 886
            LFCN QGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQ+NGLHFLS                   LI YCFRALS GIRLFANMMAGHS VKILSGFAWTMLCMN++ YFIGDLGPLFIVLALTGLELGVAI QA+V TILICIYLNDAINLH S   FIIEQKRV
Sbjct:  229 LFCNPQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQKNGLHFLSFLLPAGVPLPLAPFLVLLELIPYCFRALSSGIRLFANMMAGHSSVKILSGFAWTMLCMNDLLYFIGDLGPLFIVLALTGLELGVAISQAHVSTILICIYLNDAINLHQSASFFIIEQKRV 395          
BLAST of CX069455 vs. ExPASy Swiss-Prot
Match: ATP62_ARATH (ATP synthase subunit a-2 OS=Arabidopsis thaliana GN=ATP6-2 PE=2 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 3.561e-66
Identity = 130/154 (84.42%), Postives = 132/154 (85.71%), Query Frame = -3
Query:  425 LFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 886
            LFCNLQGMIPYSFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                   LISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMN+IFYFIG LGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH
Sbjct:  196 LFCNLQGMIPYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 349          
BLAST of CX069455 vs. ExPASy Swiss-Prot
Match: ATP61_ARATH (ATP synthase subunit a-1 OS=Arabidopsis thaliana GN=ATP6-1 PE=2 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 3.561e-66
Identity = 130/154 (84.42%), Postives = 132/154 (85.71%), Query Frame = -3
Query:  425 LFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 886
            LFCNLQGMIPYSFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                   LISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMN+IFYFIG LGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH
Sbjct:  232 LFCNLQGMIPYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 385          
BLAST of CX069455 vs. ExPASy Swiss-Prot
Match: ATP6_BRANA (ATP synthase subunit a OS=Brassica napus GN=ATP6 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.651e-66
Identity = 130/154 (84.42%), Postives = 131/154 (85.06%), Query Frame = -3
Query:  425 LFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 886
            LFCNLQGMIPYSFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                   LISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMN IFYFIG LGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH
Sbjct:  107 LFCNLQGMIPYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNEIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 260          
BLAST of CX069455 vs. ExPASy Swiss-Prot
Match: ATP6_VICFA (ATP synthase subunit a OS=Vicia faba GN=ATP6 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.954e-64
Identity = 129/161 (80.12%), Postives = 133/161 (82.61%), Query Frame = -3
Query:  404 LFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH*SGYLFI 886
            LFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLS                   LISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMN++ YFIGDLGPLFIVLALTG ELGVAI QA+V TI ICIYLNDA NLH +  LFI
Sbjct:  129 LFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNDLLYFIGDLGPLFIVLALTGPELGVAISQAHVSTISICIYLNDATNLHQTCLLFI 289          
BLAST of CX069455 vs. ExPASy Swiss-Prot
Match: ATP6_WHEAT (ATP synthase subunit a OS=Triticum aestivum GN=ATP6 PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.506e-60
Identity = 122/154 (79.22%), Postives = 126/154 (81.82%), Query Frame = -3
Query:  425 LFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 886
            LF N QGMIP+SFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                   LISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTML +NNIFYFIGDLGPLFIVLALTGLELGVAI QA+V TI ICIYLNDA NLH
Sbjct:  226 LFRNPQGMIPFSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLFLNNIFYFIGDLGPLFIVLALTGLELGVAISQAHVSTISICIYLNDATNLH 379          
BLAST of CX069455 vs. ExPASy Swiss-Prot
Match: ATP6_TRITI (ATP synthase subunit a OS=Triticum timopheevi GN=ATP6 PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.506e-60
Identity = 122/154 (79.22%), Postives = 126/154 (81.82%), Query Frame = -3
Query:  425 LFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 886
            LF N QGMIP+SFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                   LISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTML +NNIFYFIGDLGPLFIVLALTGLELGVAI QA+V TI ICIYLNDA NLH
Sbjct:  226 LFRNPQGMIPFSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLFLNNIFYFIGDLGPLFIVLALTGLELGVAISQAHVSTISICIYLNDATNLH 379          
BLAST of CX069455 vs. ExPASy Swiss-Prot
Match: ATP6_MARPO (ATP synthase subunit a OS=Marchantia polymorpha GN=ATP6 PE=3 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 3.570e-58
Identity = 118/154 (76.62%), Postives = 123/154 (79.87%), Query Frame = -3
Query:  425 LFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 886
            LFCNL GMIPYSFTVTSHF+ITLGLSFS+FIGITIVGFQ +GLHF S                   LISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTML M  I Y +G L P FIV ALTGLELGVAILQAYVFTIL+CIYLNDAINLH
Sbjct:  100 LFCNLIGMIPYSFTVTSHFIITLGLSFSLFIGITIVGFQTHGLHFFSILLPQGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLSMGGILY-LGQLAPFFIVFALTGLELGVAILQAYVFTILLCIYLNDAINLH 252          
BLAST of CX069455 vs. ExPASy Swiss-Prot
Match: ATP6_MAIZE (ATP synthase subunit a OS=Zea mays GN=ATP6 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.039e-57
Identity = 118/154 (76.62%), Postives = 124/154 (80.52%), Query Frame = -3
Query:  425 LFCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 886
            LF N QGMIP+SFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                   LIS+CFRALS GIRLFANMMAGHS VKILSGFAWTML +NNIFYF+GDLGPLFIVLALTGLELGVAI QA+V TI ICIYLNDA NLH
Sbjct:  123 LFRNPQGMIPFSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISHCFRALSSGIRLFANMMAGHSSVKILSGFAWTMLFLNNIFYFLGDLGPLFIVLALTGLELGVAISQAHVSTISICIYLNDATNLH 276          
The following BLAST results are available for this feature:
BLAST of CX069455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
ATP6_OENBE1.308e-6886.36ATP synthase subunit a OS=Oenothera bertiana GN=AT... [more]
ATP6_TOBAC9.372e-6779.64ATP synthase subunit a OS=Nicotiana tabacum GN=ATP... [more]
ATP62_ARATH3.561e-6684.42ATP synthase subunit a-2 OS=Arabidopsis thaliana G... [more]
ATP61_ARATH3.561e-6684.42ATP synthase subunit a-1 OS=Arabidopsis thaliana G... [more]
ATP6_BRANA4.651e-6684.42ATP synthase subunit a OS=Brassica napus GN=ATP6 P... [more]
ATP6_VICFA1.954e-6480.12ATP synthase subunit a OS=Vicia faba GN=ATP6 PE=3 ... [more]
ATP6_WHEAT6.506e-6079.22ATP synthase subunit a OS=Triticum aestivum GN=ATP... [more]
ATP6_TRITI6.506e-6079.22ATP synthase subunit a OS=Triticum timopheevi GN=A... [more]
ATP6_MARPO3.570e-5876.62ATP synthase subunit a OS=Marchantia polymorpha GN... [more]
ATP6_MAIZE1.039e-5776.62ATP synthase subunit a OS=Zea mays GN=ATP6 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10E09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10E09-I18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069455 ID=CX069455; Name=CX069455; organism=Citrus sinensis; type=EST; length=888bp
TGCATGCTAAGATTCAAAGCTATCCATTCATCCTGAGTTCGGATCCGGCC
ACCCCTTCGGTCGATCGGTCAACTGACAGCGGTCAGCAGATAGATCGGAA
TCGCGTTAAGAAGATCATTCGATGGTTACCGTTAGTTGGGCCTCTCTTGG
AAGAGCCTCTTCACTGCACTCAGAAGACTAACCTAACTTAGTAGCCGTGC
TGGGATGGCATCGAGCAAGCAGCGGTAGCAGGGCCGGACCTAGTGCAAAA
GCAAAGAAGCAGAAGTCGAGGCAAGAGCTATACCTTCTGGAACCGGAGCA
ATAATTGCTATAAAGGAAGCAGATGCGCAGGAACGATCCCTAAAGCAAAT
ACTCGGAATGCTCCACGACTAAGTATACCCATTCAGACTCGCTTTTGTTC
AATTATAAATAAATAACCACTTTAATGGAGATTTATAGCATCATTCAAGT
AAATACAGATTAAGATCGTAAAAACATAAGCTTGTAATATAGCTACACCT
AATTCCAGGCCGGTTAATGCAAGAACTATAAATAAAGGACCAAGATCCCC
TATGAAATAGAAAATATTATTCATACATAGCATAGTCCAAGCGAACCCAC
TTAAAATCTTTACTAAACTATGACCGGCCATCATATTAGCAAATAAACGT
ATTCCTAAGCTTAATGCGCGAAAACAATAAGAGATTAGCTCAAGGAGTAC
TAAAAAAGGCGCTAACGGCAGTGGGACTCCTGCAGGTAAGAAGAAGCTTA
AAAAATGAAGCCCATTTCTTTGAAATCCCACTATAGTAATGCCAATAAAA
ATGGAAAATGAGAGACCCAAAGTAATGAGAAAATGGCTTGTAACTGTGAA
GCTATAAGGTATCATACCCTGGAGATTACAAAATAACA
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