CX069454

Overview
NameCX069454
Unique NameCX069454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069454_ssr55 microsatellite CX069454_ssr55:55..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9552 contig Csv1_Contig9552:730..1522. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069454 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 5.219e-87
Identity = 158/200 (79.00%), Postives = 178/200 (89.00%), Query Frame = -1
Query:  143 QLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 742
            QLGAEHSQRLESYFQS+PG+Q+VACSTP NAKGL+K++IRSENPVILFEHVLLYNLKE IPD EY+  LE+AE+VRPG  +TILTYSRMR+HV+QA K+LV KGYDPE+IDI SLKP DL TI  SIKKTH+VLIVEECMRTGGIGASL A I E+  D+LDAPI+CLSSQDVPTPY+G LEE TV+QPAQIV AVEQLC
Sbjct:  124 QLGAEHSQRLESYFQSVPGLQLVACSTPINAKGLIKSSIRSENPVILFEHVLLYNLKETIPDNEYLVCLEKAEIVRPGTDITILTYSRMRHHVLQATKSLVYKGYDPEIIDIVSLKPVDLGTISTSIKKTHKVLIVEECMRTGGIGASLRATIMEHLFDFLDAPIMCLSSQDVPTPYSGPLEELTVIQPAQIVQAVEQLC 323          
BLAST of CX069454 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 319.316 bits (817), Expect = 1.518e-86
Identity = 158/218 (72.48%), Postives = 184/218 (84.40%), Query Frame = -1
Query:  140 GQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 793
            G FT            RQLGAEHSQRLESYFQS+PG+QMVACSTPYNAKGL+K+AIRS+NP+ILFEHVLLYNLKE + +EEY+  LE+AE+VRPG  +TILTYSRMR++V+QA K+LV KGYDPE+IDI SLKPFDL TIG S+ KTH+VLIVEECMRTGGIGA+L AAI E+F DYLDAPI+CLSSQDVPTPY+  LEE TV+QP QI+  VEQLC+
Sbjct:  107 GNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSDNPIILFEHVLLYNLKEDLAEEEYLVCLEKAEVVRPGNDITILTYSRMRHNVLQATKSLVYKGYDPEIIDIVSLKPFDLGTIGASVCKTHKVLIVEECMRTGGIGATLRAAIMEHFFDYLDAPILCLSSQDVPTPYSSPLEELTVIQPNQIIQVVEQLCE 324          
BLAST of CX069454 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 6.379e-85
Identity = 150/201 (74.63%), Postives = 177/201 (88.06%), Query Frame = -1
Query:  140 QLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 742
            QLGAEHSQRLESYFQS+PG+QMVACSTPYN KGL+K+AIR++NPVI FEHVLLYNL E + ++EY+  LE+AE+VRPG  +TILTYSRMR+HV+QAAK LVNKGYDPE+IDI SLKP D+ TI  S++KTH+VLIVEECMRTGGIGASL AAI E+  DYLDAPI CLSSQDVPTPY+G LEE TV+QP QI+ AVE++C+
Sbjct:  124 QLGAEHSQRLESYFQSVPGLQMVACSTPYNGKGLLKSAIRNDNPVIFFEHVLLYNLNENLIEQEYLLCLEKAEVVRPGNDITILTYSRMRHHVLQAAKVLVNKGYDPEIIDILSLKPLDMGTISLSVRKTHKVLIVEECMRTGGIGASLRAAILEDLFDYLDAPIQCLSSQDVPTPYSGPLEELTVIQPNQIIQAVEEMCK 324          
BLAST of CX069454 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 6.602e-82
Identity = 147/216 (68.06%), Postives = 177/216 (81.94%), Query Frame = -1
Query:  146 GQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 793
            G FT            RQLGAEHSQRLESYFQS+PG+QMVACSTPYNAKGL+K+AIRS+NP+I FEHVLLYN+KE IP +EY+  LE+AE+VR G  +TILTYSRMRYHV+QAAKTL+ KGYDPE+IDI SLKP D+ TI  S++KTH+VLIVEECM+TGGIG +L +AI E+  D+LD PI+ LSSQDVPTPY G LE+ TV+QP+QIV A E++
Sbjct:  107 GNFTTPLVVRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSQNPIIFFEHVLLYNIKENIPQKEYLVPLEKAELVRSGNQITILTYSRMRYHVLQAAKTLIEKGYDPEIIDIISLKPLDMGTISTSLRKTHKVLIVEECMKTGGIGTTLKSAILESLFDFLDTPIMSLSSQDVPTPYNGFLEDLTVIQPSQIVEAAEKI 322          
BLAST of CX069454 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.333e-74
Identity = 136/216 (62.96%), Postives = 171/216 (79.17%), Query Frame = -1
Query:  146 GQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 793
            G FT            RQLGAEHSQRLE+YFQ+IPG+++VACSTPYNAKGL+K+AIR  NPV+ FEHVLLYNL+E IP++EY+  L++AE+VR G+ +TILTYSRMR+HV +A   L+N GYDPEV+D+ SLKP D+ +I  S+KKTHRVLIVEECM+T GIGA L A I E+  D LDAP+V LSSQD+PTPY G+LE+ TV+QP QI+ AV+ +
Sbjct:  107 GNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQEEIPEDEYLIPLDKAEVVRKGKDITILTYSRMRHHVTEALPLLLNDGYDPEVLDLISLKPLDIDSISVSVKKTHRVLIVEECMKTAGIGAELIAQINEHLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPHQIIDAVKNI 322          
BLAST of CX069454 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.879e-74
Identity = 132/199 (66.33%), Postives = 166/199 (83.42%), Query Frame = -1
Query:  146 QLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 742
            QLGAEHSQRLE+YFQ+IPG+++VACSTPYNAKGL+K+AIR  NPVI FEHVLLYNLK+ +P++EY   L++AE+VR G  VTILTYSRMR+HVMQA   LVN GY+PEVID+ SLKP D+ +I  S+ KTH+++IVEECM+TGGIGA + A I +N+ D+LDAPIV LSSQD+PTPY G LE+ TV+ P QI+ AV+ +
Sbjct:  124 QLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVIFFEHVLLYNLKDELPNDEYFLPLDKAELVRDGLDVTILTYSRMRHHVMQAVVDLVNDGYNPEVIDLISLKPLDITSIAQSLMKTHKLIIVEECMKTGGIGAEIIAQINDNYFDFLDAPIVRLSSQDIPTPYNGKLEKATVIYPQQIIEAVKSI 322          
BLAST of CX069454 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.474e-73
Identity = 136/216 (62.96%), Postives = 167/216 (77.31%), Query Frame = -1
Query:  146 GQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 793
            G FT            RQLGAEHSQRLE+YFQ+IPG+++VACSTPYNAKGL+K+AIR  NPV+ FEHVLLYNL+E IP EEY   L + E VR G+ +TILTYSRMR+HV+QA   L+ +GYDPEVID+ SLKP D+ +I  S+KKTH+VLIVEECM+T GIGA L A I E   D LDAP+V LSSQD+PTPY G+LE+ TV+QP+QIV +V+ +
Sbjct:  107 GNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQEEIPQEEYFLPLNKVEFVRKGKDITILTYSRMRHHVIQALPALLKEGYDPEVIDLISLKPLDIDSISISVKKTHKVLIVEECMKTAGIGAELIAQINEYLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPSQIVDSVKSI 322          
BLAST of CX069454 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 7.316e-73
Identity = 133/199 (66.83%), Postives = 162/199 (81.41%), Query Frame = -1
Query:  146 QLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 742
            QLGAEHSQRLE YFQS+PG+Q+VACSTPYNAKGL+K+AIRS+NP+   EHVLLYNLK  +PD +Y+  LE+AE+VR G  +TILTYSRMRY+V+QA K LV KGYDPE+ID+ SLKPFD+ TIG SI+KTH+VLIVEE M TGGI   L + I ENF D LD   +CLSS +VPTPY+G LEE ++VQ A I+ +VEQ+
Sbjct:  124 QLGAEHSQRLECYFQSVPGLQIVACSTPYNAKGLLKSAIRSKNPIFFLEHVLLYNLKAEVPDNDYVLPLEKAEIVRQGNDITILTYSRMRYNVIQAVKVLVEKGYDPEIIDLISLKPFDIETIGKSIQKTHKVLIVEESMMTGGISNVLQSLILENFFDDLDNRPMCLSSPNVPTPYSGPLEEVSIVQTADIIESVEQI 322          
BLAST of CX069454 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.380e-71
Identity = 130/197 (65.99%), Postives = 159/197 (80.71%), Query Frame = -1
Query:  152 QLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVE 742
            QLGAEHSQRLESYFQS+PG+Q+V CSTPYNAKGL+K+AIRS+NP++  EHVLLYNLK  +PD +Y+  LE+AE+VR G  +T+LTYSR RY+V+QA K LV +GYDPEVID+ SLKPFD+ TIG SI+KTH+VLIVEECM TGGI   L + I +NF D LDA  + LSS +VPTPY G LEE TVVQ   I+ ++E
Sbjct:  124 QLGAEHSQRLESYFQSVPGLQIVTCSTPYNAKGLLKSAIRSKNPILFIEHVLLYNLKGEVPDNDYLLPLEKAELVREGSDITVLTYSRQRYNVIQAVKVLVEEGYDPEVIDLISLKPFDMETIGKSIQKTHKVLIVEECMMTGGISNVLQSLIIDNFFDALDAAPLILSSPNVPTPYTGPLEEATVVQTIDIIESIE 320          
BLAST of CX069454 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.999e-67
Identity = 125/199 (62.81%), Postives = 157/199 (78.89%), Query Frame = -1
Query:  146 QLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 742
            QL AEHSQR+E+YFQ++PG+++VACSTPYNAKGL+KAAIR  NPV+  EHVLLYNLK+ IP +EY+  L++A++VR G  VTI+TYSRM +HVMQA K LV +G +PEVID+ SLKP DL T+  S+ KTH+ +IVEECM+TGGI A + A I  +  D LDAPI  LSS+DVPTPY G LE+  +VQP QIV AV+ L
Sbjct:  125 QLSAEHSQRIEAYFQAVPGLKIVACSTPYNAKGLLKAAIRDNNPVLFLEHVLLYNLKQEIPKQEYVLPLDKAQVVREGSDVTIITYSRMLHHVMQAVKQLVAQGMNPEVIDLISLKPIDLETLVTSVSKTHKAIIVEECMQTGGIAAEVMAQIYSHAFDELDAPIRRLSSKDVPTPYNGYLEQACLVQPTQIVEAVKTL 323          
The following BLAST results are available for this feature:
BLAST of CX069454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_STAPU5.219e-8779.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR1.518e-8672.48Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAGL6.379e-8574.63Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAVU6.602e-8268.06Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU1.333e-7462.96Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL3.879e-7466.33Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE1.474e-7362.96Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MESVI7.316e-7366.83Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHLAT1.380e-7165.99Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME5.999e-6762.81Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10E08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10E08-I16-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069454 ID=CX069454; Name=CX069454; organism=Citrus sinensis; type=EST; length=793bp
CTTGATTTCATGAACAGTTGCACGTTTTTATCGCACAAAATTGCTAACAA
TCTTAATAAATAAATATTCAAAGCAAAGCTGCTGAGAACTAACACTGCAT
AGATAGATTCGGTTATGACACTTCGGTATTCAAAAACTATTGGCAAAGCT
GCTCAACTGCTGTCACAATCTGGGCAGGTTGAACCACAGTCCATTCCTCC
AATGTGCCGGCATATGGAGTTGGCACGTCCTGTGATGATAAGCATACAAT
AGGAGCATCCAAGTAATCATGGAAATTCTCAGTGATAGCTGCAGTTAAAC
TAGCACCAATTCCACCAGTCCGCATGCACTCCTCCACAATCAGTACACGA
TGTGTCTTTTTAATTGAATTTCCAATGGTATAAAGATCAAATGGTTTCAA
TGACCTGATGTCAATAACCTCAGGATCATACCCTTTGTTTACCAAAGTTT
TAGCAGCTTGCATCACATGATACCTCATTCGAGAATAGGTTAAAATAGTG
ACATGCTCCCCAGGCCTAACCATCTCAGCTTCCTCAAGATTACAAATGTA
TTCCTCATCTGGAATCCTTTCCTTGAGGTTGTAAAGCAACACATGCTCGA
AAAGTATAACTGGGTTCTCACTTCGGATTGCAGCTTTCATCAAGCCCTTG
GCATTGTATGGGGTCGAGCATGCCACCATTTGAATTCCAGGGATTGATTG
AAAATATGACTCAAGGCGTTGGGAATGCTCAGCTCCAAGTTGTCGGCCAA
CTCCACCAGGTCCACGGATAACTATTGGTATGGTAAACTGCCC
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