CX069441

Overview
NameCX069441
Unique NameCX069441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069441_ssr572 microsatellite CX069441_ssr572:572..583. BLAST: Citrus ESTs to Prunus persica proteins V1
CX069441_ssr121 microsatellite CX069441_ssr121:121..132. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069441 vs. ExPASy Swiss-Prot
Match: USPAL_ARATH (Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.449e-15
Identity = 50/172 (29.07%), Postives = 83/172 (48.26%), Query Frame = -3 
Query:  211 GKKKMKVMVAIDESA---------ESVNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQQPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 699
            G +  KVMVA++ S              A +W L+ +         +      + ++HVQ   +           + YA+      +R+S +     LL   +  C +  V  E+ +  GDPKD+ICQ  +++  D LVVGSRGLG+ ++ F+G+VS +C  HA CP++ +K
Sbjct:    2 GSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIV-------RSNTSDFKILLLHVQVVDE----DGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIK 162
[Close]
BLAST of CX069441 vs. ExPASy Swiss-Prot
Match: YXIE_BACSU (Uncharacterized protein yxiE OS=Bacillus subtilis GN=yxiE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.825e-11
Identity = 46/158 (29.11%), Postives = 77/158 (48.73%), Query Frame = -3 
Query:  211 KVMVAIDESAESVNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQQPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 684
            K++VAID S  S  AL  A+            A      L+I+HV +     V+   S +   Y     ++ +R   ++    +L  A +   +K V+AE++   G+P   I   A++  + L+VVGSRG+  +K   LGSVS   +  + CP++IV+
Sbjct:    4 KMLVAIDGSDMSAKALDAAVHL----------AKEQQAELSILHVGR---EAVVTTSSLTGIVYVPEHFIDEIRNEVKKEGLKILENAKEKAAEKGVQAETIYANGEPAHEILNHAKEKGVSLIVVGSRGISGLKEMMLGSVSHKVSQLSTCPVLIVR 148
The following BLAST results are available for this feature:
BLAST of CX069441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
USPAL_ARATH1.449e-1529.07Universal stress protein A-like protein OS=Arabido... [more]
YXIE_BACSU4.825e-1129.11Uncharacterized protein yxiE OS=Bacillus subtilis ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_10D12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D12-G24-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069441 ID=CX069441; Name=CX069441; organism=Citrus sinensis; type=EST; length=809bp
TTTTTTTTTTTTTTTTTATAACTTGAAAAGCATGAAAAGTTTCCATGTAA
CCATTCGAAATTACAGAAAATGACCATTCGAAATTACAGAAAATGAAACT
TACACAGAGTTATATACTGCACAAACAAACAAAACCACATTCTTCAGATC
GCAAACTTTCACTATGCCACAGTCCTTGTAGTTCTGCTACTCATGCTGTT
CCTTGGGTGGCTTTACAATAATGATCGGGCATACAGCATGATGCGCACAG
TAATCACTTACACTCCCCAAGAATGCCCTTTTAATCTTGCCGAGGCCGCG
GCTTCCGACAACAAGGAGATCAATGTGCATTTGCTCAGCAGACTGACAAA
TCATGTCCTTTGGATCCCCTTCAAGAACCAGACTCTCTGCTTTCACCATC
TTATCTTTACACATCTGCAATGCCCGGGAAAGTAACGCCGCTGAATTTTC
TTCTTGGGATTTCCTCACAGATTCTACCATCGAAGATGTTGCATAAAATG
CTGAACTGGTACTTAAGGCTGGCAAAACGAAGCGCTGAAATGGCTGCTGA
ACATGAACGATTGTTAGGATACCGCCGCCGCCGCCAGCTTCCGGCGTAAA
GCCGACGATACCATAAAGATTGTCAAGAGCCCATTTGAGTGCATTGACAC
TCTCTGCACTTTCATCAATAGCCACCATCACCTTCATCTTCTTCTTGCCG
TCGGTCATTTTTGTCTCCTCTTCTTCTTTTGATTGCAGCATTGCTGACCC
TGAACCACCTGGAACTGTTTCTTTCTCCATTACCCAATTCTTTTACACCT
CCCTCTCGG
back to top