DR403842

Overview
NameDR403842
Unique NameDR403842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:152..595. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_CITSI (Photosystem II reaction center protein K OS=Citrus sinensis GN=psbK PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.483e-21
Identity = 51/61 (83.61%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLNIFSLMYICLNSA YSSSFLFAKLPEAYAFLNPIVDVMPVIP         WQAAVSFR
Sbjct:    1 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_VITVI (Photosystem II reaction center protein K OS=Vitis vinifera GN=psbK PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.178e-19
Identity = 47/61 (77.05%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLNIFSL+ ICLNSA YSS+F FAKLPEAYAFLNPIVDVMPVIP         WQAAVSFR
Sbjct:    1 MLNIFSLICICLNSALYSSNFFFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_JASNU (Photosystem II reaction center protein K OS=Jasminum nudiflorum GN=psbK PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.763e-19
Identity = 47/61 (77.05%), Postives = 48/61 (78.69%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLNIFSL+ ICLNSA YSSSF F KLPEAYAFLNPIVDVMPVIP         WQAAVSFR
Sbjct:    1 MLNIFSLISICLNSALYSSSFFFGKLPEAYAFLNPIVDVMPVIPVFFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_PANGI (Photosystem II reaction center protein K OS=Panax ginseng GN=psbK PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.570e-18
Identity = 46/61 (75.41%), Postives = 48/61 (78.69%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLNIFSL+ ICLNSA YSSS  FAKLPEAYAFLNPIVD+MPVIP         WQAAVSFR
Sbjct:    1 MLNIFSLICICLNSALYSSSLFFAKLPEAYAFLNPIVDLMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_DAUCA (Photosystem II reaction center protein K OS=Daucus carota GN=psbK PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.356e-18
Identity = 46/61 (75.41%), Postives = 48/61 (78.69%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLNIFSL+ ICLNSA YSSS  FAKLPEAYAFLNPIVD+MPVIP         WQAAVSFR
Sbjct:    1 MLNIFSLICICLNSAFYSSSLFFAKLPEAYAFLNPIVDLMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_COFAR (Photosystem II reaction center protein K OS=Coffea arabica GN=psbK PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.356e-18
Identity = 44/61 (72.13%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLNIFSL++ICLNSA YSS F F KLPEAYAFLNPI+D MPVIP         WQAAVSFR
Sbjct:    1 MLNIFSLIWICLNSALYSSGFFFGKLPEAYAFLNPIIDFMPVIPVFFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_MORIN (Photosystem II reaction center protein K OS=Morus indica GN=psbK PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.384e-18
Identity = 46/61 (75.41%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLNIFSL+ ICLNS  YSSSF  AKLPEAYAFLNPIVDVMPVIP         WQAAVSFR
Sbjct:    1 MLNIFSLICICLNSVLYSSSFFVAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_LIRTU (Photosystem II reaction center protein K OS=Liriodendron tulipifera GN=psbK PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.384e-18
Identity = 45/61 (73.77%), Postives = 48/61 (78.69%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLNIFSL+ IC+NSA +SSSF FAKLPEAYAF NPIVDVMPVIP         WQAAVSFR
Sbjct:    1 MLNIFSLICICINSALHSSSFFFAKLPEAYAFFNPIVDVMPVIPVLFFLLALVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_GOSHI (Photosystem II reaction center protein K OS=Gossypium hirsutum GN=psbK PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.725e-18
Identity = 45/61 (73.77%), Postives = 48/61 (78.69%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLNIF+L+ IC NSA +SSSFLFAKLPEAYAFLNPIVD MPVIP         WQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSSFLFAKLPEAYAFLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_GOSBA (Photosystem II reaction center protein K OS=Gossypium barbadense GN=psbK PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.725e-18
Identity = 45/61 (73.77%), Postives = 48/61 (78.69%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLNIF+L+ IC NSA +SSSFLFAKLPEAYAFLNPIVD MPVIP         WQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSSFLFAKLPEAYAFLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
The following BLAST results are available for this feature:
BLAST of DR403842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
PSBK_CITSI2.483e-2183.61Photosystem II reaction center protein K OS=Citrus... [more]
PSBK_VITVI5.178e-1977.05Photosystem II reaction center protein K OS=Vitis ... [more]
PSBK_JASNU6.763e-1977.05Photosystem II reaction center protein K OS=Jasmin... [more]
PSBK_PANGI2.570e-1875.41Photosystem II reaction center protein K OS=Panax ... [more]
PSBK_DAUCA3.356e-1875.41Photosystem II reaction center protein K OS=Daucus... [more]
PSBK_COFAR3.356e-1872.13Photosystem II reaction center protein K OS=Coffea... [more]
PSBK_MORIN4.384e-1875.41Photosystem II reaction center protein K OS=Morus ... [more]
PSBK_LIRTU4.384e-1873.77Photosystem II reaction center protein K OS=Liriod... [more]
PSBK_GOSHI5.725e-1873.77Photosystem II reaction center protein K OS=Gossyp... [more]
PSBK_GOSBA5.725e-1873.77Photosystem II reaction center protein K OS=Gossyp... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246H04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403842 ID=DR403842; Name=DR403842; organism=Citrus sinensis; type=EST; length=445bp
GCCGGGGGAAAAAAAAAAAAAAAAAAAGTANNNNTNNNNCAATTCTCACA
CGAGAATAGAAGGATTTTTGTTTTGATTGGGTCGGTTCCAAGAAGTTTTT
TTTTGTCTACCTTACTTTCTTTTCTTCATTTTTATCTTATATCAATAAGA
TATTAATAACTCAATCAAAATAAAATTATCTCCAAGAACAAAATGTTTGT
TATGCTTAATATCTTTAGTTTAATGTATATCTGTCTTAATTCTGCCCCTT
ATTCGAGTAGTTTTTTATTCGCTAAATTACCCGAGGCCTACGCTTTTTTG
AATCCAATTGTAGATGTTATGCCAGTAATACCTGTTCTATTTTTTCTCTT
AGTCTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATAAGATCTTTAATATT
GTGCTAGAAAAATTCATGATTTATTCTAGTTCGAAAAAAAAAAAA
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