CX069438

Overview
NameCX069438
Unique NameCX069438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX069438 vs. ExPASy Swiss-Prot
Match: EXOC5_ORYSJ (Exocyst complex component 5 OS=Oryza sativa subsp. japonica GN=SEC10 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.833e-27
Identity = 55/106 (51.89%), Postives = 62/106 (58.49%), Query Frame = 2 
Query:   98 SMIVAVVADTVRKEAATITAVFPSPNYVMSILVQVP*PSFISCLHFFPFWLEIELLFHNNVKYFMQRVLEQRVTAILDKLLVKPSLVNLPPMEEGGLLLVSRITNV 415
            S++   +ADTVR+EA TI AVFPSPN VMSILVQ                                RVLEQRVTAILDKLL+KPSL NLPP+EEGGLL   R+  V
Sbjct:  316 SVLYKEIADTVRREATTIMAVFPSPNEVMSILVQ--------------------------------RVLEQRVTAILDKLLIKPSLANLPPIEEGGLLHYLRVLAV 389

HSP 2 Score: 54.299 bits (129), Expect = 1.833e-27
Identity = 23/33 (69.70%), Postives = 31/33 (93.94%), Query Frame = 3 
Query:  489 LQYLRMLAVAYEKTQELARDLRTVGCGDLDIEG 587
            L YLR+LAVAY+KT+ELA++L+++ CGDLDIEG
Sbjct:  381 LHYLRVLAVAYDKTKELAKELQSISCGDLDIEG 413
[Close]
BLAST of CX069438 vs. ExPASy Swiss-Prot
Match: EXOC5_ARATH (Exocyst complex component 5 OS=Arabidopsis thaliana GN=SEC10 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 5.260e-27
Identity = 51/106 (48.11%), Postives = 61/106 (57.55%), Query Frame = 2 
Query:   98 SMIVAVVADTVRKEAATITAVFPSPNYVMSILVQVP*PSFISCLHFFPFWLEIELLFHNNVKYFMQRVLEQRVTAILDKLLVKPSLVNLPPMEEGGLLLVSRITNV 415
            S +   + DTVRKEAATITAVFP+PN VM+ILVQ                                RVLEQRVT ILDK+L KPSL++ PP++EGGLLL  R+  V
Sbjct:  338 SALFKEITDTVRKEAATITAVFPTPNEVMAILVQ--------------------------------RVLEQRVTGILDKILAKPSLMSPPPVQEGGLLLYLRMLAV 411

HSP 2 Score: 59.3066 bits (142), Expect = 5.260e-27
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 3 
Query:  489 LQYLRMLAVAYEKTQELARDLRTVGCGDLDIE 584
            L YLRMLAVAYE+TQELA+DLR VGCGDLD+E
Sbjct:  403 LLYLRMLAVAYERTQELAKDLRAVGCGDLDVE 434
The following BLAST results are available for this feature:
BLAST of CX069438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EXOC5_ORYSJ1.833e-2751.89Exocyst complex component 5 OS=Oryza sativa subsp.... [more]
EXOC5_ARATH5.260e-2748.11Exocyst complex component 5 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_10D11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D11-G22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069438 ID=CX069438; Name=CX069438; organism=Citrus sinensis; type=EST; length=880bp
GCCCCCCCTCGAGGACTTGCTTCCTTGTACACGATATAACAGGTTTGGAG
GATCAGAATTGGTCTGAACACAAGGGTTTACATTTCAATGGCTTTTTAGT
ATGATTGTCGCTGTTGTTGCAGATACTGTGCGGAAAGAAGCAGCAACAAT
TACTGCAGTTTTCCCTTCTCCTAATTATGTCATGAGTATTCTAGTTCAGG
TACCTTAGCCTTCATTTATTTCATGTTTGCACTTTTTTCCTTTTTGGCTG
GAAATTGAGTTGTTATTTCACAATAATGTTAAATATTTCATGCAGCGAGT
TTTGGAGCAGCGGGTTACAGCCATTCTGGACAAACTATTAGTGAAACCAT
CTCTTGTGAATCTACCTCCAATGGAAGAAGGCGGACTCCTATTAGTAAGT
AGAATTACTAATGTTAAATTACATTCATTCATGCAAATGTGAGTTTAAAG
TGACAATCAGATATTAACTCTGTGTGTTTGGCTTGAGGCTTCAGTATCTT
AGAATGCTTGCCGTTGCTTATGAGAAGACACAGGAACTTGCTAGAGACCT
ACGAACCGTGGGATGTGGTGATTTGGATATTGAGGGTAATGAATTAGTTG
CTTTGTGAATATTTCTTACCCTTCGTTCTCACAACTAAGTTAAAAGAAAT
AGTTGTTTGGAATTGCATTTTTACGGGGAGGAGAGACTATGTTGATTATG
GTCGTATGTAGTCTCAAGTAATTTAAATATAGATGTGCAACATGAATGTT
TAATGAAGAAAAATAATTTTGTTGCATGTTTTTCTTGATATCTTTCGGCG
ATAGTCATAATTTATGACAACTGAGAGACCTTCTTGTAGTTGAGAGGTTC
AGATATGGTTTAGAACCTTCCTTTTGATGC
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