DR403841

Overview
NameDR403841
Unique NameDR403841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403841_ssr81 microsatellite DR403841_ssr81:81..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7105 contig Csv1_Contig7105:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR403841 vs. ExPASy Swiss-Prot
Match: Y2734_ARATH (Uncharacterized protein At2g17340 OS=Arabidopsis thaliana GN=At2g17340 PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.743e-65
Identity = 120/150 (80.00%), Postives = 134/150 (89.33%), Query Frame = 2 
Query:  296 MESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGK 745
            MES+SE+VPFP LP PIE NYRACTIPYRFP+D+PKK T  EI+W+++F NSIPSFKKRAESD TVPDA  RAEKFA+RY+ ILED+KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFKKVKDEENAKAISLF  VV L+D IED+GK
Sbjct:    1 MESDSEMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGK 150
The following BLAST results are available for this feature:
BLAST of DR403841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2734_ARATH1.743e-6580.00Uncharacterized protein At2g17340 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246H03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403841 ID=DR403841; Name=DR403841; organism=Citrus sinensis; type=EST; length=747bp
GCCGGGGGAAAACAAAAAGCAAGTATATATAAGGAAAAGNNNNGNNNNGA
GAAGCGTATTCTAATTNNNNTAAGAAAGACAGAGAGAGAGAGAGAGAGAG
AGAGAGAGANNNNGGGAGGATTTGGGCGGTCGCAGACGCAGAGCACGGCC
CCCAAGACAACGGAATCCATTCTCAGCAGACCAACTTGAGAGGATAGCTG
TTGCCTTGCCATTCTCTCCCTTTTTCTATACATATAATAAGTCAGCTGCT
TCGCATTTTGTTTCTTCATTCTTCATTTCATTCATTCCGCAAGAAATGGA
GAGTGAATCGGAGCTTGTTCCATTCCCACTGCTTCCGACTCCGATCGAAA
CAAACTACAGGGCATGCACAATTCCGTACAGATTCCCAACTGACAATCCC
AAAAAGCCTACTCGTACTGAGATTGCTTGGCTCGACCTCTTCCTCAATTC
TATTCCTTCTTTCAAGAAGCGAGCTGAGAGTGATCCCACTGTGCCTGATG
CTCACGTCAGAGCTGAGAAATTTGCTCAAAGGTATTCAGAGATACTTGAG
GACATGAAGAAAGATCCAGAAACTCATGGTGGACCACCTGATTGCATTCT
TCTTTGCCGACTTCGTGAGCAAGTCCTTAGAGAATTGGGCTTCAGAGATA
TATTCAAGAAAGTCAAGGATGAAGAGAATGCAAAGGCTATATCCTTATTT
GGGGATGTGGTTCGTCTTAACGATGTTATCGAAGATGAAGGCAAGCG
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