DR403840

Overview
NameDR403840
Unique NameDR403840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403840_ssr36 microsatellite DR403840_ssr36:36..49. BLAST: Citrus ESTs to Prunus persica proteins V1
DR403840_ssr257 microsatellite DR403840_ssr257:257..280. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig527 contig Csv1_Contig527:48..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD31_ARATH (Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 1.148e-45
Identity = 101/197 (51.27%), Postives = 132/197 (67.01%), Query Frame = 3
Query:  147 QQPHNSTFLLDALYCSEENWEDELRVDCFQVQDGGLIXXXXXXXXXXSFYFINKTKTIPVPVPMLHEQDLSWQDDELSTLLSKEVPNRLYNILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVLST 737
            ++  +++FLLDALYC EE W+DE      +V++   +                   +   P  +L +QDL W+D++L TL SKE    L  +   +  LS  R EAV W+L+VNAHY F+ L A+LA+ YLD+F+ S+ LQRDKPWM QL +VACLSLAAKVEETQVPLLLD QVE+TK+VFEAKTIQRME+L+LST
Sbjct:   10 REEQSNSFLLDALYCEEEKWDDEGE----EVEENSSL------------------SSSSSPFVVL-QQDLFWEDEDLVTLFSKEEEQGLSCL--DDVYLSTDRKEAVGWILRVNAHYGFSTLAAVLAITYLDKFICSYSLQRDKPWMLQLVSVACLSLAAKVEETQVPLLLDFQVEETKYVFEAKTIQRMELLILST 181          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD33_ARATH (Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.236e-40
Identity = 95/199 (47.74%), Postives = 126/199 (63.32%), Query Frame = 3
Query:  144 QQQPHNSTF-LLDALYCSEENWEDELRVDCFQVQDGGLIXXXXXXXXXXSFYFINKTKTIPVPVPMLHEQDLSWQDDELSTLLSKEVPNRLYNILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVLST 737
            +++  N+ F +LD L+C EE+   E    C +  +               F F+N           L + D+ W DDELSTL+SK+ P  LY+ +  +  L   R +A+DW+ KV +HY F +LTALLAVNY DRF+ S + Q DKPWM+QL A+ACLSLAAKVEE +VP LLD QVE+ ++VFEAKTIQRME+LVLST
Sbjct:    6 EEESQNAPFCVLDGLFCEEESEFHEQVDLCDESVE--------------KFPFLNLG---------LSDHDMLWDDDELSTLISKQEPC-LYDEILDDEFLVLCREKALDWIFKVKSHYGFNSLTALLAVNYFDRFITSRKFQTDKPWMSQLTALACLSLAAKVEEIRVPFLLDFQVEEARYVFEAKTIQRMELLVLST 180          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD32_ARATH (Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.739e-39
Identity = 97/200 (48.50%), Postives = 123/200 (61.50%), Query Frame = 3
Query:  144 QQQPHNSTF-LLDALYCSEENWEDELRVDCFQVQDGGLIXXXXXXXXXXSFYFINKTKTIPVPVPMLHEQDLSWQDDELSTLLSKE-VPNRLYNILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVLST 737
            ++   N  F +LD LYC EE    E  +D     DG L            F F+          P+L      W DDE+ +L+SKE   N  +     +  L   R EA+DW+L+V +HY FT+LTA+LAVNY DRF+ S +LQ DKPWM+QL AVA LSLAAKVEE QVPLLLDLQVE+ +++FEAKTIQRME+L+LST
Sbjct:    7 EEASQNGAFCVLDGLYCEEETGFVEDDLD----DDGDLDFLEKSDESVVKFQFL----------PLLDM--FLWDDDEILSLISKENETNPCFGEQILDGFLVSCRKEALDWVLRVKSHYGFTSLTAILAVNYFDRFMTSIKLQTDKPWMSQLVAVASLSLAAKVEEIQVPLLLDLQVEEARYLFEAKTIQRMELLILST 190          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD21_ARATH (Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 2.102e-31
Identity = 73/141 (51.77%), Postives = 100/141 (70.92%), Query Frame = 3
Query:  330 VPMLHEQDLSWQDDELSTLLSKEV---PNRLY--NILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVLST 737
            +PM+     S  +D +  +L +E+   P   Y   +L  +  LS  R++A+DW+LKV AHY F  L   L++NYLDRFL S++L +DK W AQL AV+CLSLA+K+EET VP ++DLQVED KFVFEAKTI+RME+LV++T
Sbjct:   52 IPMMGSSSSSLSEDRIKEMLVREIEFCPGTDYVKRLLSGDLDLS-VRNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTT 191          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD41_ORYSJ (Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.178e-30
Identity = 66/97 (68.04%), Postives = 78/97 (80.41%), Query Frame = 3
Query:  447 RARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVLST 737
            R R +A+DW+ KV+++YSF  LTA LAVNYLDRFL  +QL   K WM QL AVACLSLAAK+EET VP  LDLQV + ++VFEAKTIQRME+LVLST
Sbjct:  101 RVRMDAIDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEERYVFEAKTIQRMELLVLST 197          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD11_ARATH (Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.559e-26
Identity = 66/130 (50.77%), Postives = 86/130 (66.15%), Query Frame = 3
Query:  357 SWQDDELSTLLSKE---VPNRLY-NILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVLS 734
            SW  D ++  +  E   VP   Y +  +T    + AR ++V W+LKV A+Y+F  LTA LAVNY+DRFL++ +L     W  QL AVACLSLAAK+EE  VP L D QV   K++FEAKTI+RME+LVLS
Sbjct:   46 SWPGDSIACFIEDERHFVPGHDYLSRFQTRSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYARRLPETSGWPMQLLAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLS 175          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD22_ORYSJ (Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.011e-25
Identity = 55/95 (57.89%), Postives = 75/95 (78.95%), Query Frame = 3
Query:  453 RSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVLST 737
            R +A+DW+ KV+++Y+F  L+  LAVNYLDRFL SF L  D+ WM QL +V+CLSLA K+EET VPL +DLQV D ++VFEA+ I+RME++V+ T
Sbjct:   95 RKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFEARHIKRMELIVMKT 189          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD42_ORYSJ (Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.251e-25
Identity = 54/96 (56.25%), Postives = 75/96 (78.12%), Query Frame = 3
Query:  447 RARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVLS 734
            R RSEA+ W+ +V  +Y+F+++TA LAVNYLDRFL  ++L   + WM QL +VACLS+AAK+EET VP  LDLQ+ + +F+FE +TI RME+LVL+
Sbjct:  108 RVRSEAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEPRFLFEVETIHRMELLVLT 203          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD23_ORYSJ (Putative cyclin-D2-3 OS=Oryza sativa subsp. japonica GN=CYCD2-3 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 60/97 (61.86%), Postives = 72/97 (74.23%), Query Frame = 3
Query:  453 RSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFS--FQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVLST 737
            R  A+DW+ KV A+YSF  L A LAVNYLDRFL S  F +  D PWM QL  VACLSLAAK+EET  P  LDLQV + ++VF+A+TI RMEI+VL+T
Sbjct:  104 RIAAIDWICKVQAYYSFGPLCAYLAVNYLDRFLSSVEFSVTNDMPWMQQLLIVACLSLAAKMEETAAPGTLDLQVCNPEYVFDAETIHRMEIIVLTT 200          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD21_ORYSJ (Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.107e-23
Identity = 57/95 (60.00%), Postives = 70/95 (73.68%), Query Frame = 3
Query:  450 ARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVLS 734
            AR+E+V W+LKV  +  F  LTA LAVNY+DRFL    L   + W  QL AVACLSLAAK+EET VP LLDLQVE +++VFE +TI RME L+L+
Sbjct:   81 ARAESVSWILKVQEYNGFLPLTAYLAVNYMDRFLSLRHLPEGQGWAMQLLAVACLSLAAKMEETLVPSLLDLQVECSRYVFEPRTICRMEFLILT 175          
The following BLAST results are available for this feature:
BLAST of DR403840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CCD31_ARATH1.148e-4551.27Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=... [more]
CCD33_ARATH3.236e-4047.74Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=... [more]
CCD32_ARATH2.739e-3948.50Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=... [more]
CCD21_ARATH2.102e-3151.77Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=... [more]
CCD41_ORYSJ5.178e-3068.04Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD11_ARATH1.559e-2650.77Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=... [more]
CCD22_ORYSJ1.011e-2557.89Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD42_ORYSJ2.251e-2556.25Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD23_ORYSJ1.117e-2461.86Putative cyclin-D2-3 OS=Oryza sativa subsp. japoni... [more]
CCD21_ORYSJ2.107e-2360.00Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246H02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403840 ID=DR403840; Name=DR403840; organism=Citrus sinensis; type=EST; length=738bp
GGGGGAGTCCCCCTCTTCTTTCACACAAGAGACTGGAGAGAGAGAGAGAG
GAAGGTGAGATGCATCAACTCCAAACACTCTCTCTTGTTGTATGATGAAA
CAAGATCTAAACCTCTTCTTCTCAGAAGAAGATGGCTGCTCACCAACAAC
AACCACATAACTCTACATTCCTTCTGGATGCTCTCTATTGCTCTGAAGAG
AATTGGGAGGACGAACTGAGAGTTGATTGCTTTCAAGTTCAAGATGGAGG
ACTAATAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAAGTTTCTATTTTA
TTAATAAAACTAAAACAATCCCAGTTCCCGTTCCAATGCTGCATGAACAA
GACTTGTCTTGGCAGGATGATGAACTTTCCACCTTACTATCCAAAGAAGT
ACCAAACCGGTTGTATAATATCCTGAAGACCAATCCATCTCTGTCTAGGG
CTCGCAGTGAGGCCGTGGATTGGATGCTGAAGGTCAATGCTCACTACTCA
TTCACTGCTCTCACCGCACTTCTTGCTGTCAACTATCTTGATAGGTTCCT
CTTCAGCTTCCAGTTGCAGAGAGATAAGCCGTGGATGGCCCAACTAGCTG
CCGTGGCTTGTCTCTCGCTTGCTGCCAAAGTGGAGGAGACACAAGTGCCC
CTCTTATTAGACCTGCAAGTGGAGGATACCAAATTTGTATTTGAGGCCAA
AACTATCCAGAGGATGGAGATTTTGGTGCTCTCCACGC
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