CX069434

Overview
NameCX069434
Unique NameCX069434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4021 contig Csv1_Contig4021:87..943. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_CITSI (30S ribosomal protein S3, chloroplastic OS=Citrus sinensis GN=rps3 PE=3 SV=1)

HSP 1 Score: 439.113 bits (1128), Expect = 1.485e-122
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 3 
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK 761
            MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK
Sbjct:    1 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK 219
[Close]
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_AETGR (30S ribosomal protein S3, chloroplastic OS=Aethionema grandiflora GN=rps3 PE=3 SV=1)

HSP 1 Score: 403.675 bits (1036), Expect = 6.914e-112
Identity = 196/218 (89.91%), Postives = 213/218 (97.71%), Query Frame = 3 
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFRLGTTQSHHSLWFA+PK YCEGL+ED+KIR+ IKNY++KNIRISSG+EGIARIEIQKRIDLIQVIIY+GFPKLL+E++PRR+EELQMNVQKELNCVNRK+NIAITRI+ PYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYCEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQVIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISTPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_AETCO (30S ribosomal protein S3, chloroplastic OS=Aethionema cordifolium GN=rps3 PE=3 SV=1)

HSP 1 Score: 403.675 bits (1036), Expect = 6.914e-112
Identity = 196/218 (89.91%), Postives = 213/218 (97.71%), Query Frame = 3 
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFRLGTTQSHHSLWFA+PK YCEGL+ED+KIR+ IKNY++KNIRISSG+EGIARIEIQKRIDLIQVIIY+GFPKLL+E++PRR+EELQMNVQKELNCVNRK+NIAITRI+ PYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYCEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQVIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISTPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_DRANE (30S ribosomal protein S3, chloroplastic OS=Draba nemorosa GN=rps3 PE=3 SV=1)

HSP 1 Score: 399.053 bits (1024), Expect = 1.703e-110
Identity = 194/218 (88.99%), Postives = 212/218 (97.25%), Query Frame = 3 
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFRLGTTQSHHSLWFA+PK Y EGL+ED+KIR+ IKNY++ NIRISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRRIEELQ+NVQKELNCVNRK+NIAITRI+NPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYSEGLEEDKKIRDCIKNYVQNNIRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRIEELQINVQKELNCVNRKLNIAITRISNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIDAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_OLIPU (30S ribosomal protein S3, chloroplastic OS=Olimarabidopsis pumila GN=rps3 PE=3 SV=1)

HSP 1 Score: 398.282 bits (1022), Expect = 2.905e-110
Identity = 194/218 (88.99%), Postives = 212/218 (97.25%), Query Frame = 3 
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFRLGTTQSHHSLWFA+PK Y EGL+ED+KIR+ IKNY++KNIRISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNVQKELNCVNRK+NIAITRI+NPYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYSEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_NASOF (30S ribosomal protein S3, chloroplastic OS=Nasturtium officinale GN=rps3 PE=3 SV=1)

HSP 1 Score: 398.282 bits (1022), Expect = 2.905e-110
Identity = 194/218 (88.99%), Postives = 212/218 (97.25%), Query Frame = 3 
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFRLGTTQSHHSLWFA+PK Y EGL+ED+KIR+ IKNY++KNIRISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNVQKELNCVNRK+NIAITRI+NPYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYSEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_CAPBU (30S ribosomal protein S3, chloroplastic OS=Capsella bursa-pastoris GN=rps3 PE=3 SV=1)

HSP 1 Score: 398.282 bits (1022), Expect = 2.905e-110
Identity = 194/218 (88.99%), Postives = 212/218 (97.25%), Query Frame = 3 
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFRLGTTQSHHSLWFA+PK Y EGL+ED+KIR+ IKNY++KNIRISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNVQKELNCVNRK+NIAITRI+NPYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYSEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_ARATH (30S ribosomal protein S3, chloroplastic OS=Arabidopsis thaliana GN=rps3 PE=3 SV=1)

HSP 1 Score: 398.282 bits (1022), Expect = 2.905e-110
Identity = 194/218 (88.99%), Postives = 212/218 (97.25%), Query Frame = 3 
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFRLGTTQSHHSLWFA+PK Y EGL+ED+KIR+ IKNY++KNIRISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNVQKELNCVNRK+NIAITRI+NPYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYSEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_ARAHI (30S ribosomal protein S3, chloroplastic OS=Arabis hirsuta GN=rps3 PE=3 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 3.794e-110
Identity = 193/218 (88.53%), Postives = 212/218 (97.25%), Query Frame = 3 
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFRLGTTQSHHS+WFA+PK Y EGL+ED+KIR+ IKNY++KNIRISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNVQKELNCVNRK+NIAITRI+NPYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQSHHSVWFAQPKKYSEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISNPYGQPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIDAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_GOSHI (30S ribosomal protein S3, chloroplastic OS=Gossypium hirsutum GN=rps3 PE=3 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 4.955e-110
Identity = 191/218 (87.61%), Postives = 211/218 (96.79%), Query Frame = 3 
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFRLGTTQSHHSLWFA+PK Y EGLQED+KIR+ IKNY++KN R+SSGVEGIARIEIQKR+DLIQVIIY+GFPKLL+E++PR++EELQMNVQKELNC+NRK+NIAITRI NPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTIGAKI+YCSY VRTIYGVLGIKIWIF+DE+
Sbjct:    1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYSEGLQEDKKIRDCIKNYVQKNTRLSSGVEGIARIEIQKRLDLIQVIIYMGFPKLLIEDKPRKLEELQMNVQKELNCMNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIGAKIEYCSYRVRTIYGVLGIKIWIFIDEE 218
The following BLAST results are available for this feature:
BLAST of CX069434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_CITSI1.485e-122100.0030S ribosomal protein S3, chloroplastic OS=Citrus ... [more]
RR3_AETGR6.914e-11289.9130S ribosomal protein S3, chloroplastic OS=Aethion... [more]
RR3_AETCO6.914e-11289.9130S ribosomal protein S3, chloroplastic OS=Aethion... [more]
RR3_DRANE1.703e-11088.9930S ribosomal protein S3, chloroplastic OS=Draba n... [more]
RR3_OLIPU2.905e-11088.9930S ribosomal protein S3, chloroplastic OS=Olimara... [more]
RR3_NASOF2.905e-11088.9930S ribosomal protein S3, chloroplastic OS=Nasturt... [more]
RR3_CAPBU2.905e-11088.9930S ribosomal protein S3, chloroplastic OS=Capsell... [more]
RR3_ARATH2.905e-11088.9930S ribosomal protein S3, chloroplastic OS=Arabido... [more]
RR3_ARAHI3.794e-11088.5330S ribosomal protein S3, chloroplastic OS=Arabis ... [more]
RR3_GOSHI4.955e-11087.6130S ribosomal protein S3, chloroplastic OS=Gossypi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D09-G18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069434 ID=CX069434; Name=CX069434; organism=Citrus sinensis; type=EST; length=857bp
GTACCGCGGCCCCCCCTCGAGTGCTCAAAAAACACTAGATTAATAAATAA
AAAAAAGAAAAAAAAAACTATGACATGTCATGATACATATAGGAATGGGG
GATTATGGGACAAAAAATAAATCCACTAGGTTTCCGGCTTGGTACAACAC
AAAGTCATCATTCTCTTTGGTTTGCAAAACCAAAAAACTATTGCGAGGGT
CTACAAGAAGATCAAAAAATACGAAACTTTATTAAGAATTATATAAAAAA
AAATATCAGAATATCTTCCGGTGTTGAGGGAATTGCACGGATAGAGATTC
AAAAAAGAATTGATCTAATTCAAGTTATAATCTATATAGGGTTCCCAAAA
TTATTACTAGAAAATAGACCGCGAAGAATTGAAGAATTACAGATGAATGT
ACAAAAAGAACTTAATTGTGTGAATCGAAAAATAAACATTGCTATTACAC
GAATTACAAATCCTTATGGACACCCCAATATTCTTGCCGAATTTATAGCC
GGACAATTAAAAAATAGAGTTTCTTTTCGAAAAGCAATGAAAAAAGCTAT
TGAATTAACGGAACAGGCCGATACAAAAGGAATTCAAGTACAAATTGCAG
GGCGTCTTGACGGAAAAGAAATTGCGCGCGCCGAATGGATCAGAGAAGGT
AGAGTTCCTCTACAAACCATTGGAGCTAAAATTGATTATTGTTCCTATAC
GGTTCGAACTATCTACGGGGTATTGGGAATCAAAATTTGGATATTTGTAG
ACGAAAAAAAATAAGAGTTTACGGGTCTTTAGAGCCCCCCCATTAATGGA
AATAAACCAAACAAAGAACGAGCTCTTTTTATCTTCAATCAAAACAAAAA
TGAGCCT
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