CX069432

Overview
NameCX069432
Unique NameCX069432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL4B_HUMAN (Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 9.534e-66
Identity = 125/193 (64.77%), Postives = 153/193 (79.27%), Query Frame = 3
Query:  261 DTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSG 839
            D I +  F KNE F N +K+AFE  IN R N+PAELIAK++D KLRAGNK  ++EELE  LDK++++FRFI GKDVFEAFYKKDLAKRLL+GKSAS+DAEKSM+SKLK ECG+ FT+KLEGMFKD+ELSK+I   FKQ  Q    +P  IE++V++LT GYWPTY PM+V LP E+   Q+IFK FYL K+SG
Sbjct:  509 DHIIDICFLKNEKFINAMKEAFETFINKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQ-NQNVPGNIELTVNILTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSG 700          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL4A_MOUSE (Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.054e-64
Identity = 122/193 (63.21%), Postives = 153/193 (79.27%), Query Frame = 3
Query:  261 DTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSG 839
            D + E  F +NE F N +K++FE  IN R N+PAELIAK +D KLRAGNK  ++EELE  LDK+++LFRFI GKDVFEAFYKKDLAKRLL+GKSAS+DAEKSM+SKLK ECG+ FT+KLEGMFKD+ELSK+I   FKQ  Q ++  P  I+++V++LT GYWPTY PM+V LP E+   Q++FK FYL K+SG
Sbjct:  373 DHVVEVCFQRNERFINLMKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERILDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQS-APGPIDLTVNILTMGYWPTYTPMEVHLPPEMVRLQEVFKTFYLGKHSG 564          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL4A_HUMAN (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 5.232e-64
Identity = 122/193 (63.21%), Postives = 152/193 (78.76%), Query Frame = 3
Query:  261 DTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSG 839
            D + E  F KNE F N +K++FE  IN R N+PAELIAK +D KLRAGNK  ++EELE TLDK+++LFRFI GKDVFEAFYKKDLAKRLL+GKSAS+DAEKSM+SKLK ECG+ FT+KLEGMFKD+ELSK+I   FKQ  Q ++     I+++V++LT GYWPTY PM+V L  E+   Q++FK FYL K+SG
Sbjct:  373 DHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSD-SGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSG 564          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL4_DICDI (Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 8.352e-62
Identity = 119/193 (61.66%), Postives = 148/193 (76.68%), Query Frame = 3
Query:  261 DTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSG 839
            D I  QSFSKNE     +K++FEY IN +QN+PAEL+A+F+D KL+ G K  SEEELE  L+K L+LFR+IQGKDVFEAFYK+DL+KRLLL KS SIDAEKSMISKLKTECG+ FT KLE MFKDIELS +I  SF+ S    T+    IEM+++VLT+G WP  PP++  LP E   YQ++F +FYLSK++G
Sbjct:  382 DRILSQSFSKNELLTYALKESFEYFINTKQNKPAELVARFIDSKLKVGGKRMSEEELETVLNKSLILFRYIQGKDVFEAFYKQDLSKRLLLDKSTSIDAEKSMISKLKTECGTTFTAKLEEMFKDIELSNDIMNSFRDSPM--TQNFKSIEMNIYVLTSGNWPIQPPIEATLPKEFLEYQEVFNKFYLSKHNG 572          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.965e-48
Identity = 101/194 (52.06%), Postives = 137/194 (70.62%), Query Frame = 3
Query:  261 DTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTK-LPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSG 839
            D + + +   ++ F ++I+ AFEY INL    P E I+ F+DEKL+ G KG SEEE++  LDK+L+LFR IQ KDVFE +YK+ LAKRLLLG+S S DAE++MI+KLKTECG QFT+KLEGMF D+ LS++    FK   Q   K LP  I+++VHVLTTG+WPT    +  LP E+ +  + FK +YLS ++G
Sbjct:  348 DNLLQNALYNDKQFIHSIQQAFEYFINLNPKSP-EYISLFIDEKLKKGLKGVSEEEVDIILDKILMLFRLIQEKDVFEKYYKQHLAKRLLLGRSISDDAERNMIAKLKTECGYQFTSKLEGMFTDMRLSQDTMSGFKTYIQNLKKALP--IDLNVHVLTTGFWPTQNTANCNLPREILLCCEAFKSYYLSNHNG 538          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.425e-46
Identity = 95/194 (48.97%), Postives = 129/194 (66.49%), Query Frame = 3
Query:  261 DTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPM-DVRLPHELNVYQDIFKEFYLSKYSG 839
            D   ++SFS +  F  TI   FEY +NL    P E ++ F+D+KL+ G KG +E+E+E  LDK +VLFRF+Q KDVFE +YK+ LA+RLL  KS S D+EK+MISKLKTECG QFT+KLEGMF+D+ +S    + F+Q  Q       G++++V VLTTGYWPT        +P       +IF+ FYL+K+SG
Sbjct:  353 DRFLQESFSNDRLFKQTIAGDFEYFLNLNSRSP-EYLSLFIDDKLKKGVKGLTEQEVESILDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQTTGVSLGGVDLTVRVLTTGYWPTQSATPKCNIPPSPRHAFEIFRRFYLAKHSG 545          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL3_XENTR (Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.391e-46
Identity = 95/194 (48.97%), Postives = 129/194 (66.49%), Query Frame = 3
Query:  261 DTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPM-DVRLPHELNVYQDIFKEFYLSKYSG 839
            D   ++SFS +  F  TI   FEY +NL    P E ++ F+D+KL+ G KG +E+E+E  LDK +VLFRF+Q KDVFE +YK+ LA+RLL  KS S D+EK+MISKLKTECG QFT+KLEGMF+D+ +S    + F+Q  Q       G++++V VLTTGYWPT        +P       +IF+ FYL+K+SG
Sbjct:  353 DRFLQESFSNDRLFKQTIAGDFEYFLNLNSRSP-EYLSLFIDDKLKKGVKGLTEQEVESILDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQTTGVSLGGVDLTVRVLTTGYWPTQSATPKCNIPPAPRHAFEIFRRFYLAKHSG 545          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL3A_XENLA (Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.391e-46
Identity = 95/194 (48.97%), Postives = 129/194 (66.49%), Query Frame = 3
Query:  261 DTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPM-DVRLPHELNVYQDIFKEFYLSKYSG 839
            D   ++SFS +  F  TI   FEY +NL    P E ++ F+D+KL+ G KG +E+E+E  LDK +VLFRF+Q KDVFE +YK+ LA+RLL  KS S D+EK+MISKLKTECG QFT+KLEGMF+D+ +S    + F+Q  Q       G++++V VLTTGYWPT        +P       +IF+ FYL+K+SG
Sbjct:  353 DRFLQESFSNDRLFKQTIAGDFEYFLNLNSRSP-EYLSLFIDDKLKKGVKGLTEQEVESILDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQTTGVSLGGVDLTVRVLTTGYWPTQSATPKCNIPPAPRHAFEIFRRFYLAKHSG 545          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL3_MOUSE (Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.096e-45
Identity = 95/194 (48.97%), Postives = 130/194 (67.01%), Query Frame = 3
Query:  261 DTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPM-DVRLPHELNVYQDIFKEFYLSKYSG 839
            D   ++SF+ +  F  TI   FEY +NL    P E ++ F+D+KL+ G KG +E+E+E  LDK +VLFRF+Q KDVFE +YK+ LA+RLL  KS S D+EK+MISKLKTECG QFT+KLEGMF+D+ +S    + F+Q  QA      G++++V VLTTGYWPT        +P       +IF+ FYL+K+SG
Sbjct:  353 DRFLQESFNNDRLFKQTIAGDFEYFLNLNSRSP-EYLSLFIDDKLKKGVKGLTEQEVETILDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQATGVSLGGVDLTVRVLTTGYWPTQSATPKCNIPPAPRHAFEIFRRFYLAKHSG 545          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL3_HUMAN (Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 4.165e-45
Identity = 94/189 (49.74%), Postives = 128/189 (67.72%), Query Frame = 3
Query:  276 QSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPM-DVRLPHELNVYQDIFKEFYLSKYSG 839
            +SF+ +  F  TI   FEY +NL    P E ++ F+D+KL+ G KG +E+E+E  LDK +VLFRF+Q KDVFE +YK+ LA+RLL  KS S D+EK+MISKLKTECG QFT+KLEGMF+D+ +S    + F+Q  QA      G++++V VLTTGYWPT        +P       +IF+ FYL+K+SG
Sbjct:  358 ESFNNDRLFKQTIAGDFEYFLNLNSRSP-EYLSLFIDDKLKKGVKGLTEQEVETILDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQATGVSLGGVDLTVRVLTTGYWPTQSATPKCNIPPAPRHAFEIFRRFYLAKHSG 545          
The following BLAST results are available for this feature:
BLAST of CX069432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
CUL4B_HUMAN9.534e-6664.77Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3[more]
CUL4A_MOUSE1.054e-6463.21Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1[more]
CUL4A_HUMAN5.232e-6463.21Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3[more]
CUL4_DICDI8.352e-6261.66Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 ... [more]
CUL3_DICDI8.965e-4852.06Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]
CUL3B_XENLA6.425e-4648.97Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1[more]
CUL3_XENTR8.391e-4648.97Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1[more]
CUL3A_XENLA8.391e-4648.97Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1[more]
CUL3_MOUSE1.096e-4548.97Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1[more]
CUL3_HUMAN4.165e-4549.74Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D08-G16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069432 ID=CX069432; Name=CX069432; organism=Citrus sinensis; type=EST; length=840bp
CTTCGGCAATGAAGAAGGCCAAGTCCCAAGCCGTGGCCTGCTCTGTGGAC
ACCGCCAACAAGAACGGTCTCCACCACGACAACGACGCCGTTTTCGATCC
CTCTTCTATTTCTCTCGATGACGATCTTAAGCCCGACGAACCCCGACAAC
AAGCCGCCGCCAATTTATCCCGCAAAAAAGCCCAGCCCCCTCAGCCCGCC
AAAAAACTTGTCATCAAGCTCCTCAAAGCTAAACCCACACTGCCTACAAA
TTTTGAGGAGGATACAATATGGGAACAAAGCTTCTCAAAGAATGAAGCAT
TTTGCAACACAATAAAGGACGCATTTGAGTATCTAATTAATCTTCGTCAG
AACCGACCTGCTGAGCTGATTGCAAAGTTTCTGGATGAGAAGCTTCGGGC
TGGAAATAAGGGTACTTCAGAAGAGGAATTGGAGGGTACACTTGATAAAG
TTCTAGTTTTATTCAGGTTTATTCAGGGTAAAGATGTGTTTGAAGCATTC
TATAAAAAGGATCTTGCAAAAAGGTTACTGTTGGGGAAGAGTGCTTCCAT
TGATGCAGAGAAATCTATGATTTCCAAGCTAAAGACTGAATGTGGCAGCC
AATTTACAAACAAACTTGAAGGGATGTTCAAGGATATTGAATTATCAAAG
GAGATAAATGAGTCCTTCAAACAGTCATCCCAGGCCAGGACAAAACTCCC
ATCAGGGATTGAGATGAGTGTCCATGTCTTGACAACCGGGTACTGGCCCA
CATATCCCCCCATGGATGTTAGGCTTCCTCATGAACTGAATGTCTATCAG
GACATTTTTAAGGAGTTCTATTTAAGCAAGTACAGTGGAA
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