CX069429

Overview
NameCX069429
Unique NameCX069429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4283 contig Csv1_Contig4283:171..953. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX069429 vs. ExPASy Swiss-Prot
Match: GAT27_ARATH (GATA transcription factor 27 OS=Arabidopsis thaliana GN=TIFY2B PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.608e-24
Identity = 62/120 (51.67%), Postives = 71/120 (59.17%), Query Frame = 2 
Query:   11 QRIASLVXXXXXXXXXXXXXXIRYSCRKEVAQRMQRKNGQFTSSKA-------TFNIXXXXXXXXXXXXXXXXVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 349
            QR+ASL+              IRY+ RKEVA RMQRK GQFTS+K+       T +                    +C+HCG SEK TP MRRGP GPRTLCNACGLMWANKGTLRDL+K
Sbjct:  142 QRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSK 261
[Close]
BLAST of CX069429 vs. ExPASy Swiss-Prot
Match: GAT25_ARATH (GATA transcription factor 25 OS=Arabidopsis thaliana GN=TIFY2A PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.101e-24
Identity = 68/147 (46.26%), Postives = 80/147 (54.42%), Query Frame = 2 
Query:    5 LSQRIASLVXXXXXXXXXXXXXXIRYSCRKEVAQRMQRKNGQFTSSKATFNIXXXXXXXXXXXXXXXXVSR-------ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKG----ARNICFEQHE---LETSSDI 403
            + QR+ASLV              IRY+ RKEVA RMQR  GQFTS+K+  +                  S         C+HCGI EK TP MRRGPAGPRTLCNACGLMWANKG  RDL+K     A+N+   ++E   LET   I
Sbjct:  144 IPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLSKASPQTAQNLPLNKNEDANLETDHQI 290
[Close]
BLAST of CX069429 vs. ExPASy Swiss-Prot
Match: GAT26_ARATH (GATA transcription factor 26 OS=Arabidopsis thaliana GN=TIFY1 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.664e-21
Identity = 57/115 (49.57%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:    5 LSQRIASLVXXXXXXXXXXXXXXIRYSCRKEVAQRMQRKNGQFTSSKATFNIXXXXXXXXXXXXXXXXVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 349
            L QR  SL               +RY  R+EVA RM R  GQFTSSK T                       C HCGIS K TP MRRGP+GPRTLCNACGL WAN+GTLRDL+K
Sbjct:  143 LPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTDGAYNSGTDQDSAQDDAHPEIS-CTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSK 256
The following BLAST results are available for this feature:
BLAST of CX069429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GAT27_ARATH1.608e-2451.67GATA transcription factor 27 OS=Arabidopsis thalia... [more]
GAT25_ARATH2.101e-2446.26GATA transcription factor 25 OS=Arabidopsis thalia... [more]
GAT26_ARATH1.664e-2149.57GATA transcription factor 26 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_10D06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D06-G12-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069429 ID=CX069429; Name=CX069429; organism=Citrus sinensis; type=EST; length=783bp
AAAGCTTTCACAAAGAATTGCTTCTCTGGTGAGGTTTCGTGAAAAACGAA
AAGAAAGAAGCTTTGAAAAAAAAATTCGGTATAGTTGTAGGAAAGAGGTT
GCTCAGAGAATGCAACGTAAAAATGGACAGTTCACATCATCGAAGGCGAC
TTTTAACATAGCTTCTGCCAATTCAAATCCAAGCAATGGCAGTGCCCCTC
CTGAATCCGTCTCGCGAATATGTCAACACTGTGGGATAAGTGAGAAGTTG
ACTCCAGCAATGCGTAGGGGGCCAGCTGGTCCAAGAACTCTTTGCAATGC
ATGTGGCCTTATGTGGGCAAACAAGGGAACCTTGAGAGATCTTACAAAAG
GGGCAAGGAATATTTGTTTCGAACAACATGAGCTGGAAACTTCTAGTGAT
ATTAAGCCTGCAACAACAGAAGCAGAAAATTCTTATGCCAACCAAGATGA
ACAGGGAAGTCCACACGAGACAAAGCCTGCACCCTTGGATCCTCAAAATC
ATTCCATGAGGTCAAATGAGCAGTACTTGCTGGAAAGTGATGATGGTTTT
GCATGTCCTTTGCCCATTCAAGAAGACAACTCATTGATGAACCTTGATGA
CGAGGACTTGCAGGAAGCTATGGATGAGCTTGCCAATGCTTCTGGGTCAG
ATTTTGAGATCCCTTCAAATTTTGATGAGCAGGTTGATGTTGATGATTCG
AATTTGGGGACGGACTGGCTGGACACTTGAAATCATGCCATTTGTTTGTA
GACATATTAAAGTAATGCACACTTGGGTTTGCC
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