CX069428

Overview
NameCX069428
Unique NameCX069428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4283 contig Csv1_Contig4283:355..1112. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX069428 vs. ExPASy Swiss-Prot
Match: GAT25_ARATH (GATA transcription factor 25 OS=Arabidopsis thaliana GN=TIFY2A PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.916e-17
Identity = 43/68 (63.24%), Postives = 49/68 (72.06%), Query Frame = -1 
Query:  540 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKG----ARNICFEQHE---LETSSDI 722
            C+HCGI EK TP MRRGPAGPRTLCNACGLMWANKG  RDL+K     A+N+   ++E   LET   I
Sbjct:  223 CRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLSKASPQTAQNLPLNKNEDANLETDHQI 290
[Close]
BLAST of CX069428 vs. ExPASy Swiss-Prot
Match: GAT27_ARATH (GATA transcription factor 27 OS=Arabidopsis thaliana GN=TIFY2B PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 9.032e-17
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = -1 
Query:  594 ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 725
            +C+HCG SEK TP MRRGP GPRTLCNACGLMWANKGTLRDL+K
Sbjct:  218 LCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSK 261
[Close]
BLAST of CX069428 vs. ExPASy Swiss-Prot
Match: GAT26_ARATH (GATA transcription factor 26 OS=Arabidopsis thaliana GN=TIFY1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.646e-16
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = -1 
Query:  594 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 722
            C HCGIS K TP MRRGP+GPRTLCNACGL WAN+GTLRDL+K
Sbjct:  214 CTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSK 256
The following BLAST results are available for this feature:
BLAST of CX069428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GAT25_ARATH6.916e-1763.24GATA transcription factor 25 OS=Arabidopsis thalia... [more]
GAT27_ARATH9.032e-1784.09GATA transcription factor 27 OS=Arabidopsis thalia... [more]
GAT26_ARATH7.646e-1681.40GATA transcription factor 26 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_10D06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D06-G12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069428 ID=CX069428; Name=CX069428; organism=Citrus sinensis; type=EST; length=758bp
CCCCCCCCCTTTTCTTTTTTTATCAAAAGCTATTTACATTATATTATCCA
AAGCAAGGTACATGAAGATGTTTTTCTATTTTGACTATGAACATAACCTG
GCTAACCTGGCTCTGGGCTGTATAATCATGTTAGTATACACCAGCAAAGG
AACTTCATTTGGCAAACCAAGTGTGCATTACTTTAATATGTCTACAAACA
AATGGCATGATTTCAAGTGTCCAGCCAGTCCGTCCCCAAATTCGAATCAT
CAACATCAACCTGCTCATCAAAATTTGAAGGGATCTCAAAATCTGACCCA
AAAGCATTGGCAAGCTCATCCATAGCTTCCTGCAAGTCCTCGTCATCAAG
GTTCATCAATGAGTTGTCTTCTTGAATGGGCAAAGGACATGCAAAACCAT
CATCACTTTCCAGCAAGTACTGCTCATTTGACCTCATGGAATGATTTTGA
GGATCCAAGGGTGCAGGCTTTGTCTCGTGTGGACTTCCCTGTTCATCTTG
GTTGGCATAAGAATTTTCTGCTTCTGTTGTTGCAGGCTTAATATCACTAG
AAGTTTCCAGCTCATGTTGTTCGAAACAAATATTCCTTGCCCCTTTTGTA
AGATCTCTCAAGGTTCCCTTGTTTGCCCACATAAGGCCACATGCATTGCA
AAGAGTTCTTGGACCAGCTGGCCCCCTACGCATTGCTGGAGTCAACTTCT
CACTTATCCCACAGTGTTGACATATTCGCGAGACGGATTCAGGAGGGGCA
CTGCCATT
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