DR403834

Overview
NameDR403834
Unique NameDR403834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12736 contig Csv1_Contig12736:5..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403834 vs. ExPASy Swiss-Prot
Match: PPD6_ARATH (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana GN=PPD6 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.869e-52
Identity = 65/74 (87.84%), Postives = 73/74 (98.65%), Query Frame = 2 
Query:  359 AGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSP 580
            AGNVQPYQFVLPP+WKQ+R+ANILSGNYCQPKCAEPW+EVKFE+EKQGKVQVVASPLIRLTNKPNA+IE++G P
Sbjct:  100 AGNVQPYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNKPNATIEDLGEP 173

HSP 2 Score: 77.0258 bits (188), Expect = 7.869e-52
Identity = 51/105 (48.57%), Postives = 59/105 (56.19%), Query Frame = 1 
Query:   40 MAASLTTPLSPKFSASNGRKPSNKIQ-RALTAFHHKGNECTRTPILXREILKGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRA 351
            MA +   P S  FS S     S K + R + A   +  +  R  +L    LK    IP  L + KE P S AREVEVGSYLP SP+DPSFV FKA P DTPALRA
Sbjct:    1 MATASLVPTSKIFSVSPKSSASIKARSRVVVASSQQQQQPRRRELL----LKSAVAIPAILQL-KEAPISAAREVEVGSYLPLSPSDPSFVLFKAKPSDTPALRA 100
The following BLAST results are available for this feature:
BLAST of DR403834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PPD6_ARATH7.869e-5287.84PsbP domain-containing protein 6, chloroplastic OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionCSAH-PNP1246G18 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246G18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403834 ID=DR403834; Name=DR403834; organism=Citrus sinensis; type=EST; length=596bp
GGGGAGGTGCTGGAAGTCTCTTGTTTCTGCAGTCCAGAAATGGCAGCTTC
TCTTACAACTCCACTCTCCCCTAAATTCTCAGCCTCAAACGGCCGTAAAC
CTTCAAATAAAATTCAAAGAGCACTAACAGCATTTCATCATAAGGGCAAC
GAGTGCACTCGTACTCCGATTCTNNNAAGAGAAATCTTGAAAGGACTGGC
GGTAATTCCAGTGACACTAATAATAAATAAAGAACCTCCATATTCAGAAG
CAAGAGAGGTGGAAGTGGGGTCCTATCTCCCGCCATCTCCAACTGACCCT
TCTTTCGTCTTCTTCAAAGCCTCTCCAAAGGACACCCCTGCTCTTCGCGC
AGTTTCTTGCAGGAAATGTGCAGCCCTACCAATTTGTTCTCCCACCAAGT
TGGAAACAGATGCGAGTAGCAAACATATTATCAGGGAATTACTGCCAGCC
GAAGTGTGCAGAGCCTTGGGTGGAGGTGAAGTTTGAGGATGAAAAGCAAG
GAAAAGTCCAAGTAGTGGCTTCTCCTTTGATACGTCTCACCAACAAACCA
AATGCATCTATTGAAGAAATTGGTAGCCCCTGAGAAAGTTATCGCC
back to top