CX069420

Overview
NameCX069420
Unique NameCX069420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX069420 vs. ExPASy Swiss-Prot
Match: UBP3_ARATH (Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana GN=UBP3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.381e-13
Identity = 33/49 (67.35%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:  544 YCLFLISM*ALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQV 690
            YC  ++   ALYFCVPFREQLL+YY++NK++ DAEENL+TCLADLF+Q+
Sbjct:   33 YCNSVLQ--ALYFCVPFREQLLEYYTSNKSVADAEENLMTCLADLFSQI 79
[Close]
BLAST of CX069420 vs. ExPASy Swiss-Prot
Match: UBP4_ARATH (Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana GN=UBP4 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:  544 YCLFLISM*ALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQV 690
            YC  ++   ALYFC PFREQLL++Y+NNK   DAEENLLTCLADLF+Q+
Sbjct:   33 YCNSVLQ--ALYFCAPFREQLLEHYANNK--ADAEENLLTCLADLFSQI 77
The following BLAST results are available for this feature:
BLAST of CX069420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBP3_ARATH9.381e-1367.35Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabido... [more]
UBP4_ARATH8.781e-1167.35Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_10D02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D02-G4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069420 ID=CX069420; Name=CX069420; organism=Citrus sinensis; type=EST; length=843bp
AATTTCGGCAACACTTGCTATTGCAACAGCGTTTTGCAGGTTCTACGCCC
CCCAATTTTCATACATATATTCTTTTTGCTTTTGAATTTTCTGATTTTGG
AATTTTTTTTGTTTTCTTTCTTAATCGCGATTTAGAATTTGATGCTAGGT
TATGATTATTTGTTTCCTTCTCTTTCAATTTTTTGAGTTTTGATTTTTTT
TTTTTTTTTTTGGTTTGACCAACAAGCTGTCGTTTCTGGCCGTTTACTGG
TCAGTTTATGTTCACCTGATTGTAAAGTTGTATGAACTCGTTTTTGTTAG
CTTTCCTACAAACTGTATTGTATTTATTGAGCTCTATCTATGTAGTCTGT
TTTAATACAAATTATATCCCTGCCGTTTATATGTTTGTGTAAGCTACTTG
ATGAGGTGGAGTTATACTTAGAATCTTAATAGTTAGTAAATAATTGACAT
TTTATTTCTCCATTGCAGCATCCAGATTATGCGTATGTTATGTTGACATG
TTTGCAACAGTCCAATGTTGATGCTTTGATATGTTAGATTTCTTATTGTC
TATTTCTGATTTCTATGTAGGCCCTTTATTTTTGTGTTCCATTTCGTGAA
CAATTGCTAGACTATTACTCAAATAATAAGAACCTTGGGGATGCTGAAGA
GAATCTCTTGACGTGCTTGGCAGACTTGTTTACACAGGTAAGATTCCTAC
TAGTCAAGTCATGTGCTGACTTCTAGTGTCGTCGTTTCTTTGTGCTCCTC
TAACTTAGAGAAGATAATTTACTAGTTTCCATGGAATCAACTCCGTCCTT
TTTAAAAAGTACAAATCTTGCTTCTCAAAAATATAAGTTTATC
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