CX069418

Overview
NameCX069418
Unique NameCX069418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069418_ssr452 microsatellite CX069418_ssr452:452..463. BLAST: Citrus ESTs to Prunus persica proteins V1
CX069418_ssr556 microsatellite CX069418_ssr556:556..567. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX069418 vs. ExPASy Swiss-Prot
Match: OLEO1_SOYBN (P24 oleosin isoform A OS=Glycine max PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.707e-15
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  134 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRTRAPGQAKRRVLGTAGGQKVRETAQMTQQKAQGTGTEAKESGK 397
            F++ SPVLVPA +  GLA+AGFLTSGAFG+TALSSFSW+ +++R T    Q     L  A    + E A+   QK +  G + KE G+
Sbjct:   91 FVLFSPVLVPATVAIGLAVAGFLTSGAFGLTALSSFSWILNYIRET----QPASENLAAAAKHHLAEAAEYVGQKTKEVGQKTKEVGQ 174          
BLAST of CX069418 vs. ExPASy Swiss-Prot
Match: OLEO2_SOYBN (P24 oleosin isoform B OS=Glycine max PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.735e-15
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  134 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRTRAPGQAKRRVLGTAGGQKVRETAQMTQQKAQGTGTEAKESGK 397
            FII SPVL+PA +  GLA+AGFLTSG FG+TALSSFSW+ +++R T    Q     L  A    + E A+   QK +  G + KE G+
Sbjct:   90 FIIFSPVLIPATVAIGLAVAGFLTSGVFGLTALSSFSWILNYIRET----QPASENLAAAAKHHLAEAAEYVGQKTKEVGQKTKEVGQ 173          
BLAST of CX069418 vs. ExPASy Swiss-Prot
Match: OLEO2_ARATH (Oleosin 21.2 kDa OS=Arabidopsis thaliana GN=At5g40420 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.832e-14
Identity = 53/132 (40.15%), Postives = 65/132 (49.24%), Query Frame = -3
Query:  167 KGMLPERTPSKSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRTR--APGQ---AKRRVLGTAG--GQKVRETAQMTQQKAQ 541
            K M+PE  PS +Q                                  LF++ SPV+VPAAL  GLA+ GFL SG FG+T LSS SW+ ++LR TR   P Q   AKRR+    G  GQK +E  Q  Q KAQ
Sbjct:   41 KSMMPESGPSSTQVLSLLIGVPVVGSLLALAGLLLAGSVIGLMVALPLFLLFSPVIVPAALTIGLAMTGFLASGMFGLTGLSSISWVMNYLRGTRRTVPEQLEYAKRRMADAVGYAGQKGKEMGQHVQNKAQ 172          
BLAST of CX069418 vs. ExPASy Swiss-Prot
Match: OLEO2_ORYSJ (Oleosin 18 kDa OS=Oryza sativa subsp. japonica GN=OLE18 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 52/145 (35.86%), Postives = 70/145 (48.28%), Query Frame = -3
Query:  137 DAIKGMLPERTPSKSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRT--RAPG---QAKRRVLGTA--GGQKVRETAQMTQQKAQGTGTEAKESG 550
            + +KG+LPE+ PS SQ                                  +F+I SPVLVPAAL+ GLA+AGFLTSGA G+  LSS +++A+  R+   R P    QA+RR+   A   G K  +     Q +A   GT A   G
Sbjct:   20 ETVKGILPEKAPSASQALTVATLFPLGGLLLVLSGLALAASVVGLAVATPVFLIFSPVLVPAALLIGLAVAGFLTSGALGLGGLSSLTFLANTARQAFQRTPDYVEQARRRMAEAAAHAGHKTAQAGHAIQGRADQAGTGAGAGG 164          
BLAST of CX069418 vs. ExPASy Swiss-Prot
Match: OLEO2_ORYSI (Oleosin 18 kDa OS=Oryza sativa subsp. indica GN=OLE18 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 52/145 (35.86%), Postives = 70/145 (48.28%), Query Frame = -3
Query:  137 DAIKGMLPERTPSKSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRT--RAPG---QAKRRVLGTA--GGQKVRETAQMTQQKAQGTGTEAKESG 550
            + +KG+LPE+ PS SQ                                  +F+I SPVLVPAAL+ GLA+AGFLTSGA G+  LSS +++A+  R+   R P    QA+RR+   A   G K  +     Q +A   GT A   G
Sbjct:   20 ETVKGILPEKAPSASQALTVATLFPLGGLLLVLSGLALAASVVGLAVATPVFLIFSPVLVPAALLIGLAVAGFLTSGALGLGGLSSLTFLANTARQAFQRTPDYVEQARRRMAEAAAHAGHKTAQAGHAIQGRADQAGTGAGAGG 164          
BLAST of CX069418 vs. ExPASy Swiss-Prot
Match: OLES2_BRANA (Oleosin S2-2 OS=Brassica napus GN=S2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 46/101 (45.54%), Postives = 57/101 (56.44%), Query Frame = -3
Query:  131 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRT--RAPGQ---AKRRVLGTAG--GQKVRETAQMTQQKAQ-----GTGTEAKESGKT 397
            F++ SPV+VPAA+  GLA+   L SG FG+T LSS SW+ ++LR T    P Q   AKRR+    G  GQK +E  Q  Q KA         TE  E GKT
Sbjct:   84 FLLFSPVIVPAAITIGLAVTAILASGLFGLTGLSSVSWVLNYLRGTSDTVPEQLDYAKRRMADAVGYAGQKGKEMGQYVQDKAHEAHDTSLTTETTEPGKT 184          
BLAST of CX069418 vs. ExPASy Swiss-Prot
Match: OLEO4_ARATH (Oleosin 20.3 kDa OS=Arabidopsis thaliana GN=OL2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.522e-12
Identity = 46/100 (46.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:  134 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRT--RAPGQ---AKRRVLGTAG--GQKVRETAQMTQQKAQGTG-----TEAKESGK 397
            F++ SPV+VPAAL  GLA+ G L SG FG+T LSS SW+ ++LR T    P Q   AKRR+    G  G K +E  Q  Q KA         TE  E GK
Sbjct:   87 FLLFSPVIVPAALTIGLAVTGILASGLFGLTGLSSVSWVLNYLRGTSDTVPEQLDYAKRRMADAVGYAGMKGKEMGQYVQDKAHEARETEFMTETHEPGK 186          
BLAST of CX069418 vs. ExPASy Swiss-Prot
Match: OLES1_BRANA (Oleosin S1-2 OS=Brassica napus GN=S1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.931e-11
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = -3
Query:  170 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRTRAP-----GQAKRRVLGTA--GGQKVRETAQMTQQKA 397
            F+I SPV+VPAA V GLA+ GF+ SGA G+T LSS SW+ + +RR R        +AK+R+   A   GQ+ ++  Q  + KA
Sbjct:   72 FLIFSPVIVPAAFVIGLAMTGFMASGAIGLTGLSSMSWVLNHIRRVRERIPDELDEAKQRLADMAEYAGQRTKDAGQTIEDKA 154          
BLAST of CX069418 vs. ExPASy Swiss-Prot
Match: OLEO7_GOSHI (Oleosin 16.4 kDa OS=Gossypium hirsutum GN=MATP7 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = -3
Query:  158 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRTRAPGQ-----AKRRVLGTAG--GQKVRETAQMTQQKAQGTG 397
            F+I SPVLVPAA+   +A+AGFL+SGAFG+T LSS S++ +  R+     Q     AKR +    G  GQK +ET Q  + KA   G
Sbjct:   66 FVIFSPVLVPAAIAVFMAVAGFLSSGAFGLTGLSSLSYVFNRFRQATGTEQLDADRAKRGMQDMVGYVGQKTKETGQTIENKAHEGG 152          
BLAST of CX069418 vs. ExPASy Swiss-Prot
Match: OLEO5_ARATH (Oleosin 5 OS=Arabidopsis thaliana GN=At3g01570 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.528e-11
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = -3
Query:  170 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRT-----RAPGQAKRRVLGTAG--GQKVRETAQMTQQKA 397
            F+I SPV+VPAA V GLA+ GFL SGA G+T LSS SW+ +++RR          +AK R+   A   GQ+ ++  Q  + KA
Sbjct:   72 FLIFSPVIVPAAFVIGLAMTGFLASGAIGLTGLSSMSWVLNYIRRAGQHIPEELEEAKHRLADMAEYVGQRTKDAGQTIEDKA 154          
The following BLAST results are available for this feature:
BLAST of CX069418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
OLEO1_SOYBN5.707e-1547.73P24 oleosin isoform A OS=Glycine max PE=2 SV=2[more]
OLEO2_SOYBN9.735e-1547.73P24 oleosin isoform B OS=Glycine max PE=2 SV=1[more]
OLEO2_ARATH2.832e-1440.15Oleosin 21.2 kDa OS=Arabidopsis thaliana GN=At5g40... [more]
OLEO2_ORYSJ2.398e-1335.86Oleosin 18 kDa OS=Oryza sativa subsp. japonica GN=... [more]
OLEO2_ORYSI2.398e-1335.86Oleosin 18 kDa OS=Oryza sativa subsp. indica GN=OL... [more]
OLES2_BRANA2.030e-1245.54Oleosin S2-2 OS=Brassica napus GN=S2 PE=1 SV=1[more]
OLEO4_ARATH4.522e-1246.00Oleosin 20.3 kDa OS=Arabidopsis thaliana GN=OL2 PE... [more]
OLES1_BRANA2.931e-1144.58Oleosin S1-2 OS=Brassica napus GN=S1 PE=1 SV=1[more]
OLEO7_GOSHI6.530e-1145.98Oleosin 16.4 kDa OS=Gossypium hirsutum GN=MATP7 PE... [more]
OLEO5_ARATH8.528e-1144.58Oleosin 5 OS=Arabidopsis thaliana GN=At3g01570 PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_10D01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D01-G2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069418 ID=CX069418; Name=CX069418; organism=Citrus sinensis; type=EST; length=612bp
TTTTTTTTTTTATCAAAACCATTCACATAATTATTCCATTACATGCAACC
CCACAACTTCACTAAGAAAAGACCATTCAAAAAACAGAGGACAGCAAAGC
CCATTGGGTCATAAAAAAGGACAGAACTTATGTCTTTCCTGATTCCTTAG
CTTCCGTTCCTGTACCCTGGGCCTTTTGCTGGGTCATCTGGGCCGTCTCC
CTAACCTTCTGGCCACCCGCCGTGCCCAGCACGCGCCGCTTCGCCTGTCC
AGGGGCCCGCGTTCTCCTTAGAAAACTGGCCATCCAAGAGAAGGAGGAGA
GCGCAGTTATTCCAAAAGCACCGGAAGTCAAGAAACCGGCGATGGCCAAG
CCAGTGACGAGGGCTGCGGGCACCAAAACCGGGCTGCAAATTATAAAAAG
CGGGGTGGCGAGAGCGAGGCAAGTGAGGGTCCCGGCCAACGTGAGACCAG
AGAGGAGGAGGAGAGTGCCACCAACAGGCAGAAGGGTAACGACAGCAAGA
AGTTGTGATTTAGATGGTGTCCTTTCGGGTAACATGCCTTTGATGGCATC
ACTTGGCTGCTGCTGCTGTTGCTGGTAGTGCTGGGTCTGGCGTGACTCGG
CCATTGAACCCT
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