CX069401

Overview
NameCX069401
Unique NameCX069401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3257 contig Csv1_Contig3257:1..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069401 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.769e-85
Identity = 149/157 (94.90%), Postives = 154/157 (98.09%), Query Frame = 3
Query:  216 MQASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAMPKKG 686
            MQASRARLFKEYKEVQREK ADPDIQL+CDD+NIFKWTALIKGPSETPYEGGVFQLAF+VPE YPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGD+RGF SMA+MYTRLAAMPKKG
Sbjct:    1 MQASRARLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAMPKKG 157          
BLAST of CX069401 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.415e-50
Identity = 90/145 (62.07%), Postives = 118/145 (81.38%), Query Frame = 3
Query:  231 ARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRL 665
            ARL KEYK +Q E+  D  +    D+S++++W A+IKGP +TPYE G F+L  +VP  YPLQPP ++F+TKIFHPN+HFKTGEICLD+LK +WS  +TLQSVCR+IIAL++ PE DSPLNCD+GNL+R+GD++G  S+ARMYTRL
Sbjct:    3 ARLMKEYKVLQNEEFEDI-LLYPRDESDLYRWVAIIKGPPDTPYENGKFELDISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLLKTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDAGNLIRNGDVKGHDSLARMYTRL 146          
BLAST of CX069401 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 4.135e-34
Identity = 73/155 (47.10%), Postives = 97/155 (62.58%), Query Frame = 3
Query:  216 MQASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAMPK 680
            M +S  RL KEY   Q    +   +     D ++F W A+I+GP+ETPYEGG + L   V E YP+ PP V F TKI HPN+ +  GE+C+DILK  WSPAW+LQS C AII+L+++ +  SPLN D+  LLR+GD   + S+ R  T L A  K
Sbjct:    1 MNSSIKRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKGK 155          
BLAST of CX069401 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.589e-31
Identity = 67/176 (38.07%), Postives = 101/176 (57.39%), Query Frame = 3
Query:  216 MQASRARLFKEYKEVQREKSADPD-------IQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLT----------------------KIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMY 656
            M ++  RL KEY+ V++E +           + L   +  +F+W+A+I+GP ++P+E  +++L   +P  YPL PP+++F+                       K+ HPNV+FKTGEICLDIL+  WSPAWTLQS   AI+ L+A+PEP SPLN D  NLL+  D   ++ +   Y
Sbjct:    1 MSSTEKRLLKEYRAVKKELTEKRSPIHDTGIVDLHPLEDGLFRWSAVIRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANLLKCDDTTAYKDLVHYY 176          
BLAST of CX069401 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.395e-27
Identity = 62/147 (42.18%), Postives = 89/147 (60.54%), Query Frame = 3
Query:  234 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 674
            R+ KE K++Q++         V +D  +F W A I GPSE+PY GGVF +    P  YP +PP+V F TK+FHPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ ++ D   ++S AR +T+  AM
Sbjct:    5 RILKELKDLQKDPPTSCSAGPVAED--MFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DKNKYESTARSWTQKYAM 147          
BLAST of CX069401 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.091e-26
Identity = 61/147 (41.50%), Postives = 89/147 (60.54%), Query Frame = 3
Query:  234 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 674
            R+ KE K++Q++         V +D  +F W A I GPS++PY GGVF +    P  YP +PP+V F TK+FHPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ ++ D   ++S AR +T+  AM
Sbjct:    5 RILKELKDLQKDPPTSCSAGPVAED--MFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DKNKYESTARTWTQKYAM 147          
BLAST of CX069401 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.091e-26
Identity = 62/147 (42.18%), Postives = 89/147 (60.54%), Query Frame = 3
Query:  234 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 674
            R+ KE K++Q++         V +D  +F W A I GPS++PY GGVF +    P  YP +PP+V F TK+FHPNV+   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ ++ D   ++S AR +T+  AM
Sbjct:    5 RILKELKDLQKDPPTSCSAGPVAED--MFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRAKYESTARSWTQKYAM 147          
BLAST of CX069401 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.430e-26
Identity = 64/147 (43.54%), Postives = 94/147 (63.95%), Query Frame = 3
Query:  234 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 674
            R+ KE + +  E    P I+   D+SN   +  +I GP ++P+EGG F+L   +PE+YP+  P+VRF+TKI+HPNV  K G ICLDILK+ WSPA  +++V  +I AL++ P PD PL  D     +S + +  ++ AR +TRL AM
Sbjct:    7 RIIKETQRLLAEPV--PGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIET-ARAWTRLYAM 149          
BLAST of CX069401 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.174e-26
Identity = 63/147 (42.86%), Postives = 95/147 (64.63%), Query Frame = 3
Query:  234 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 674
            R+ KE + +  E    P I+   D+SN   +  +I GP ++P+EGG F+L   +PE+YP+  P+VRF+TKI+HPNV  K+G ICLDILK+ WSPA  +++V  +I AL++ P PD PL  D     ++ + +  ++ AR +TRL AM
Sbjct:    7 RIIKETQRLLAEPV--PGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD-KSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIET-ARAWTRLYAM 149          
BLAST of CX069401 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.174e-26
Identity = 62/149 (41.61%), Postives = 92/149 (61.74%), Query Frame = 3
Query:  234 RLFKEYKEVQREKSADPDIQLVCDDS--NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 674
            R+ KE KE+QR    DP +      +  ++F W A I GP+E+PY GGVF +    P  YP +PP+V F TK+FHPN++   G ICLDILK+ WSPA T+  V  +I +L+  P PD PL  +  ++ ++ D   +++MAR +T+  A+
Sbjct:    5 RILKELKELQR----DPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNIN-SNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKT-DKTKYEAMARSWTQKYAL 147          
The following BLAST results are available for this feature:
BLAST of CX069401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBC21_ARATH1.769e-8594.90Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBCX_DICDI1.415e-5062.07Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UBC16_SCHPO4.135e-3447.10Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UBCX_PICAN5.589e-3138.07Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]
UBC10_ARATH6.395e-2742.18Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC9_ARATH1.091e-2641.50SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC28_ARATH1.091e-2642.18Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBE2N_RAT2.430e-2643.54Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_MACFA3.174e-2642.86Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBC29_ARATH3.174e-2641.61Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10C02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10C02-E4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069401 ID=CX069401; Name=CX069401; organism=Citrus sinensis; type=EST; length=820bp
CGGACACTGATTTTTCAAAAGGTCAAAAGGAATCGTCGAACAAACTCAAA
ATTCCCTCATTGAGCATCAACTCCTTTGTCAAAATCAGAGACAAGCAAAG
CGATTCCCTCTCTCGAGTTTCGACTCAGATAACTTCAACAGGGGAAACTG
CAGTCCTTGGATCAAAGCTTGATATTTGCATTGAAGTAGATTGAGATACA
AAAGCAGTATCCAAAATGCAGGCATCTAGGGCAAGGTTATTCAAGGAGTA
CAAAGAAGTGCAGCGAGAGAAATCAGCTGACCCAGACATTCAATTAGTTT
GTGATGATTCCAACATATTTAAATGGACTGCTCTTATTAAGGGACCATCA
GAGACTCCTTATGAGGGTGGGGTATTCCAGCTTGCTTTTGCTGTTCCTGA
GCAATATCCTCTGCAACCTCCACAAGTGCGGTTTTTAACAAAAATATTCC
ATCCAAATGTGCATTTTAAGACAGGAGAGATATGCCTTGACATATTGAAG
AACGCATGGAGCCCAGCTTGGACGCTTCAGTCTGTTTGTAGGGCTATAAT
CGCTTTGATGGCACATCCAGAACCTGATAGTCCACTAAATTGTGATTCAG
GCAACCTTTTACGCTCAGGTGATATAAGAGGATTTCAATCCATGGCAAGG
ATGTACACTAGACTTGCGGCAATGCCCAAGAAGGGGTGATTGACGAAGCC
CTATTCAGTGTTATAAATTATGAGAGCGTGATGTTATATAATTGTGACTG
AACAACTATGGTTCTGTGGCTACATCCAGAGATTTTTTCTTTTTTTTTAA
AAAGCTTTTTGAACTCTCCT
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