CX069396 | Citrus Genome Database

Overview


Name	CX069396
Unique Name	CX069396
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	870

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CX069396_ssr425	microsatellite	CX069396_ssr425:425..434.	BLAST: Citrus ESTs to Prunus persica proteins V1
CX069396_ssr633	microsatellite	CX069396_ssr633:633..650.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX069396 vs. ExPASy Swiss-Prot
Match: CI085_HUMAN (Uncharacterized protein C9orf85 OS=Homo sapiens GN=C9orf85 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.238e-19
Identity = 43/103 (41.75%), Postives = 64/103 (62.14%), Query Frame = 1

Query:   55 RRGPPKHQNRYAWK-PKAGQKINEREVGGKLRPYSEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVI 360
            R  P KHQN +++K  K  + +  +++  KL       GVC RCK+ ++W+ +Y KYKPLS+P KC +C ++ V+ +YH +C  CA E  VCAKC  + D VI
Sbjct:   10 RSRPQKHQNTFSFKNDKFDKSVQTKKINAKLHD-----GVCQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEDIVI 107

[Close]

BLAST of CX069396 vs. ExPASy Swiss-Prot
Match: CI085_MOUSE (Uncharacterized protein C9orf85 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.511e-18
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1

Query:   55 RRGPPKHQNRYAWK-PKAGQKINEREVGGKLRPYSEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVI 360
            R  P KHQN + +K  K  + +  +++  KL       GVC RCK+ ++W+ +Y KYKPLS+P KC +C ++ V+ +YH +C  CA E  VCAKC  + + VI
Sbjct:   10 RSRPQKHQNTFTFKNDKFDKSVQTKKINAKLHD-----GVCQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEEIVI 107

[Close]

BLAST of CX069396 vs. ExPASy Swiss-Prot
Match: CI085_RAT (Uncharacterized protein C9orf85 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.742e-17
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 1

Query:   55 RRGPPKHQNRYAWK-PKAGQKINEREVGGKLRPYSEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVI 360
            R  P KHQN + +K  K  + +  +++  KL       GVC RCK+ ++W+ +Y KYKPLS+P KC +C ++ V+ +YH +C  CA +  VCAKC    + VI
Sbjct:   10 RSRPQKHQNTFTFKNDKFDKSVQTKKINAKLHD-----GVCQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACKLEVCAKCGKEEEIVI 107

The following BLAST results are available for this feature:

BLAST of CX069396 vs. ExPASy Swiss-Prot

BLAST of CX069396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3


Match Name	E-value	Identity	Description
CI085_HUMAN	9.238e-19	41.75	Uncharacterized protein C9orf85 OS=Homo sapiens GN...	[more]
CI085_MOUSE	3.511e-18	40.78	Uncharacterized protein C9orf85 homolog OS=Mus mus...	[more]
CI085_RAT	1.742e-17	39.81	Uncharacterized protein C9orf85 homolog OS=Rattus ...	[more]

Properties


Property Name	Value
Genbank description	UCRCS08_10B11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10B11-C22-1-5.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX069396 ID=CX069396; Name=CX069396; organism=Citrus sinensis; type=EST; length=870bp
CCAAAATTCAAAAGCAAATAAAAAAAGAAGTAGAAGATGAGCAGCAACAG
TAGCAGGCGTGGCCCGCCGAAGCACCAGAACCGCTACGCCTGGAAGCCGA
AAGCTGGCCAGAAGATCAATGAAAGAGAAGTTGGTGGAAAACTAAGACCC
TACTCTGAGATAACAGGAGTATGTCCTCGATGTAAAGATCAGATTGATTG
GAAACGCCGTTATGGCAAATATAAACCTCTCTCTGAGCCTGCCAAGTGTC
AGCGTTGTACCAAGCGTGCCGTACGTCAAGCTTACCATAACCTCTGTCCT
GGTTGTGCCAAGGAACAAAATGTATGTGCAAAGTGTTGTTCCCGCGTGGA
TCGTGTGATTGGAAGAGACCTTGCAGAGGTAGAGGCTGAACAAAAGATGC
TTGAAGCGGCACTAAAAAATGCTCGAGAGAGAGATCGAAGAATTCTTCTA
CGTGCTCAAAAAATCCAGCCAACAAAAATAAAGTTGGGGAATTATTTCCT
TCCGCATCACTTGAGGAATATGCTGCAAAAAGCAGAGGTGACAAAGACAA
TAACAATGGTGATAACATGGATAAAATCAATGATGAAGATGATGGTGTTG
ACGGTGTAACTGGAGTTAGTGATCTTGATGACGATGATGATGATGATGAT
TATGTTGAAGATGCTGAACAAGTTTGTAATTGGTAGATGCCAAACTTCTT
TCAAGCTGCTTTTAGTATGCCGATGATCTCCTACCAATAACAGTGGATAT
GCTGATCATTTTCCTTTATTTTGGCCATTGTGCATCTATAATATAGATCA
TATTTACTGGAAAGTCAGATTAAATTTTGTTTCCCCTTGTCTATGTAGTG
TTATTTTGTGCGATTTGCTG