DR403817

Overview
NameDR403817
Unique NameDR403817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403817_ssr251 microsatellite DR403817_ssr251:251..262. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig175 contig Csv1_Contig175:8..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403817 vs. ExPASy Swiss-Prot
Match: CSD2B_XENLA (CDGSH iron sulfur domain-containing protein 2-B OS=Xenopus laevis GN=cisd2-B PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 2 
Query:  281 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 469
            INL I+K   KVV+ + + +L     AYCRCWRS TFP+CDGSH KHN+ TGDNVGPL+LKK+
Sbjct:   71 INLKIQKENPKVVNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNVGPLILKKK 133
[Close]
BLAST of DR403817 vs. ExPASy Swiss-Prot
Match: CSD2A_XENLA (CDGSH iron sulfur domain-containing protein 2-A OS=Xenopus laevis GN=cisd2-A PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 2 
Query:  281 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 469
            INL I+K   KVV+ + + +L     AYCRCWRS TFP+CDGSH KHN+ TGDNVGPL+LKK+
Sbjct:   71 INLKIQKENPKVVNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNVGPLILKKK 133
[Close]
BLAST of DR403817 vs. ExPASy Swiss-Prot
Match: CISD2_XENTR (CDGSH iron sulfur domain-containing protein 2 OS=Xenopus tropicalis GN=cisd2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 2 
Query:  281 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 469
            INL I+K   KVV+ + + +L     AYCRCWRS TFP+CDGSH KHN+ TGDNVGPL+LKK+
Sbjct:   71 INLKIQKENPKVVNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNVGPLILKKK 133
[Close]
BLAST of DR403817 vs. ExPASy Swiss-Prot
Match: CISD2_MOUSE (CDGSH iron sulfur domain-containing protein 2 OS=Mus musculus GN=Cisd2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 2 
Query:  281 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 469
            INL I+K   KVV+ + + +L     AYCRCWRS TFP CDGSH KHN+ TGDNVGPL+LKK+
Sbjct:   71 INLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLILKKK 133
[Close]
BLAST of DR403817 vs. ExPASy Swiss-Prot
Match: CISD2_HUMAN (CDGSH iron sulfur domain-containing protein 2 OS=Homo sapiens GN=CISD2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 2 
Query:  281 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 469
            INL I+K   KVV+ + + +L     AYCRCWRS TFP CDGSH KHN+ TGDNVGPL+LKK+
Sbjct:   71 INLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLILKKK 133
[Close]
BLAST of DR403817 vs. ExPASy Swiss-Prot
Match: CISD2_BOVIN (CDGSH iron sulfur domain-containing protein 2 OS=Bos taurus GN=CISD2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 2 
Query:  281 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 469
            INL I+K   KVV+ + + +L     AYCRCWRS TFP CDGSH KHN+ TGDNVGPL+LKK+
Sbjct:   71 INLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLILKKK 133
[Close]
BLAST of DR403817 vs. ExPASy Swiss-Prot
Match: CISD1_RAT (CDGSH iron sulfur domain-containing protein 1 OS=Rattus norvegicus GN=Cisd1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 2 
Query:  281 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 469
            +NL I+K   KVV +  + +L      YCRCWRS  FP CDG+H+KHN+ TGDNVGPL++KK+
Sbjct:   45 VNLQIQKDNPKVVHAFDMEDLGDK-AVYCRCWRSKKFPFCDGAHIKHNEETGDNVGPLIIKKK 106
[Close]
BLAST of DR403817 vs. ExPASy Swiss-Prot
Match: CISD1_MOUSE (CDGSH iron sulfur domain-containing protein 1 OS=Mus musculus GN=Cisd1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 2 
Query:  281 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 469
            +NL I+K   KVV +  + +L      YCRCWRS  FP CDG+H+KHN+ TGDNVGPL++KK+
Sbjct:   45 VNLQIQKDNPKVVHAFDMEDLGDK-AVYCRCWRSKKFPFCDGAHIKHNEETGDNVGPLIIKKK 106
[Close]
BLAST of DR403817 vs. ExPASy Swiss-Prot
Match: CISD1_HUMAN (CDGSH iron sulfur domain-containing protein 1 OS=Homo sapiens GN=CISD1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 2 
Query:  281 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 469
            INL I+K   K+V +  + +L      YCRCWRS  FP CDG+H KHN+ TGDNVGPL++KK+
Sbjct:   45 INLHIQKDNPKIVHAFDMEDLGDK-AVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
[Close]
BLAST of DR403817 vs. ExPASy Swiss-Prot
Match: CISD1_BOVIN (CDGSH iron sulfur domain-containing protein 1 OS=Bos taurus GN=CISD1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 2 
Query:  281 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 469
            +N  I+K   KVV +  + +L      YCRCWRS  FPLCDGSH KHN+ TGDNVGPL++KK+
Sbjct:   43 VNPHIQKDNPKVVHAFDMEDLGDK-AVYCRCWRSKKFPLCDGSHTKHNEETGDNVGPLIIKKK 104
The following BLAST results are available for this feature:
BLAST of DR403817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CSD2B_XENLA3.334e-1761.90CDGSH iron sulfur domain-containing protein 2-B OS... [more]
CSD2A_XENLA3.334e-1761.90CDGSH iron sulfur domain-containing protein 2-A OS... [more]
CISD2_XENTR3.334e-1761.90CDGSH iron sulfur domain-containing protein 2 OS=X... [more]
CISD2_MOUSE5.687e-1761.90CDGSH iron sulfur domain-containing protein 2 OS=M... [more]
CISD2_HUMAN5.687e-1761.90CDGSH iron sulfur domain-containing protein 2 OS=H... [more]
CISD2_BOVIN5.687e-1761.90CDGSH iron sulfur domain-containing protein 2 OS=B... [more]
CISD1_RAT2.642e-1453.97CDGSH iron sulfur domain-containing protein 1 OS=R... [more]
CISD1_MOUSE2.642e-1453.97CDGSH iron sulfur domain-containing protein 1 OS=M... [more]
CISD1_HUMAN7.686e-1453.97CDGSH iron sulfur domain-containing protein 1 OS=H... [more]
CISD1_BOVIN7.686e-1455.56CDGSH iron sulfur domain-containing protein 1 OS=B... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246F20 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246F20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403817 ID=DR403817; Name=DR403817; organism=Citrus sinensis; type=EST; length=680bp
GGGGACCCAAGTGTGGCTATAATAAGTTCACACTGCAAGCGAGCCAACAA
CCAAGCGTGTGCTGGCCACAGGTTGATTCTATGCACTCAGCTTTTTCTCT
CCGCCTTATCAATCACATATTTTTTCAGAGCGTATCAATCCGTGCGTTTC
AATGGCGTCGATTGCGATGAGTTGTTCGGCGGCTGTGCCTGGATTCCGTT
TCAACAAATCGCCAATGGCGGCGGGTGTAGTTACGGCGAGGCCGAGGCGC
GTGGTGGTGGTGAGAGCGGAAGGTCAGGGGATCAATTTGGATATCAGGAA
GACGGAGGAGAAGGTTGTTGACTCTGTCGTGGTAACCGAGCTCTCCAAGC
CCCTCACCGCGTATTGCAGATGCTGGAGGTCAGGGACGTTCCCCCTGTGC
GATGGAAGCCACGTAAAGCACAACAAAGCTACTGGGGATAATGTTGGGCC
TTTGCTGTTGAAAAAGCAGTGATTATGTTATGTATTTTCATTTTCCCTTG
GTGCCATTTGTTCCTGAACTTGAGAACTGAAACACTTTTGAGAGTTGATT
GCATGAATAATGAGTTTTCTGTCATTAGTTGACCAAAACTTTGGTCGCAA
TAGAATGCTAGGAATAATAGCCTAGGCGATGTTAGATTAAAGAGAGAAAC
AGTATTGGGCCTTGGGTATTGTTGGGCCTT
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