DR403804

Overview
NameDR403804
Unique NameDR403804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12736 contig Csv1_Contig12736:5..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR403804 vs. ExPASy Swiss-Prot
Match: PPD6_ARATH (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana GN=PPD6 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 3.899e-72
Identity = 96/113 (84.96%), Postives = 109/113 (96.46%), Query Frame = 2 
Query:  359 AGNVQPYQFVLPPSWKQMRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSPEKVIASLGPFVTGNSYDPDELIETSVEKVGDQMYYNYLL 697
            AGNVQPYQFVLPP+WKQ+R+ANILSGNYCQPKCAEPW+EVKFE+EKQGKVQVVASPLIRLTNKPNA+IE++G PEKVIASLGPFVTGNSYD DEL++TS+EK+GDQ YY Y+L
Sbjct:  100 AGNVQPYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNKPNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVL 212

HSP 2 Score: 78.1814 bits (191), Expect = 3.899e-72
Identity = 49/104 (47.12%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:   40 MAASLTTPLSPKFSASNGRKPSNKIQRALTAFHHKGNECTRTPILRREILKGLAVIPVTLIINKEPPYSEAREVEVGSYLPPSPTDPSFVFFKASPKDTPALRA 351
            MA +   P S  FS S     S K +  +       ++  + P  R  +LK    IP  L + KE P S AREVEVGSYLP SP+DPSFV FKA P DTPALRA
Sbjct:    1 MATASLVPTSKIFSVSPKSSASIKARSRVVV---ASSQQQQQPRRRELLLKSAVAIPAILQL-KEAPISAAREVEVGSYLPLSPSDPSFVLFKAKPSDTPALRA 100
The following BLAST results are available for this feature:
BLAST of DR403804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PPD6_ARATH3.899e-7284.96PsbP domain-containing protein 6, chloroplastic OS... [more]
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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246F05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403804 ID=DR403804; Name=DR403804; organism=Citrus sinensis; type=EST; length=697bp
GGGGAGGTGCTGGAAGTCTCTTGTTTCTGCAGTCCAGAAATGGCAGCTTC
TCTTACAACTCCACTCTCCCCTAAATTCTCAGCCTCAAACGGCCGTAAAC
CTTCAAATAAAATTCAAAGAGCACTAACAGCATTTCATCATAAGGGCAAC
GAGTGCACTCGTACTCCGATTCTGAGAAGAGAAATCTTGAAAGGACTGGC
GGTAATTCCAGTGACACTAATAATAAATAAAGAACCTCCATATTCAGAAG
CAAGAGAGGTGGAAGTGGGGTCCTATCTCCCGCCATCTCCAACTGACCCT
TCTTTCGTCTTCTTCAAAGCCTCTCCAAAGGACACCCCTGCTCTTCGCGC
AGTTTCTTGCAGGAAATGTGCAGCCCTACCAATTTGTTCTCCCACCAAGT
TGGAAACAGATGCGAGTAGCAAACATATTATCAGGGAATTACTGCCAGCC
GAAGTGTGCAGAGCCTTGGGTGGAGGTGAAGTTTGAGGATGAAAAGCAAG
GAAAAGTCCAAGTAGTGGCTTCTCCTTTGATACGTCTCACCAACAAACCA
AATGCATCTATTGAAGAAATTGGTAGCCCTGAGAAAGTTATCGCCTCTCT
AGGCCCTTTTGTCACTGGTAACTCGTATGATCCTGATGAGCTCATAGAAA
CATCAGTAGAGAAAGTTGGGGATCAGATGTATTACAACTATCTGCTT
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