DR403795

Overview
NameDR403795
Unique NameDR403795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6129 contig Csv1_Contig6129:1..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403795 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.581e-16
Identity = 48/101 (47.52%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  363 SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQK 665
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   G     +I R +T   +TVL+A FG+R+L       P  GQ+
Sbjct:   89 TNLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFG-YATTVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQE 188          
BLAST of DR403795 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 3
Query:  363 SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQK 665
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   G     +I R +T   +T L+A FG+R+L       P  GQ+
Sbjct:   89 ANLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFG-YATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQE 188          
BLAST of DR403795 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 3
Query:  363 SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQK 665
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   G     +I R +T   +T L+A FG+R+L       P  GQ+
Sbjct:   89 TNLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFG-YATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQE 188          
BLAST of DR403795 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.061e-12
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  384 AFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLL 626
            + I S SMI   EIGD+TFI+AAL+A  + + TV +G+ SALF+MT+L   LG   P L  RK T+    VL+  FG+++L
Sbjct:   49 SLIFSISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKML 129          
BLAST of DR403795 vs. ExPASy Swiss-Prot
Match: YB37_YEAST (UPF0016 membrane protein YBR187W OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  384 AFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRL 623
            +F+ S SMI +SEIGD+TF+IAALMAMRH +  V S A ++L +MT+LS  +G      +S ++T   A +L+  FG +L
Sbjct:   41 SFLMSVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLSERYTAFFAGILFLVFGYKL 120          
The following BLAST results are available for this feature:
BLAST of DR403795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TM165_HUMAN1.581e-1647.52Transmembrane protein 165 OS=Homo sapiens GN=TMEM1... [more]
TM165_RAT3.523e-1646.53Transmembrane protein 165 OS=Rattus norvegicus GN=... [more]
TM165_MOUSE3.523e-1646.53Transmembrane protein 165 OS=Mus musculus GN=Tmem1... [more]
YD68_SCHPO1.061e-1246.91UPF0016 membrane protein C17G8.08c OS=Schizosaccha... [more]
YB37_YEAST6.875e-1246.25UPF0016 membrane protein YBR187W OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246E20 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246E20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403795 ID=DR403795; Name=DR403795; organism=Citrus sinensis; type=EST; length=667bp
GGGGTGGTCAAATCCTCGGCAAATGCAGCCATTTCATATACAAGCCCCCC
CCCCCCTCCCGCACTGCCACTGCAGAGATCTTGGCGCTTCGGCAAGGTCT
CTCTCTTTCTCTCTCGCAGATCTGTTTGTTTCCCTCCAGTTCTTTCTAAA
TTTACGACATGGGTTTGGTTTCAAACCCCGTCCGCTTTCTCTTCGTCGCC
CTTTCCATCTTCTCCGCTCTTTCTGCCATCTCTGCTCAGGACACCCTTTT
CGAATCCGATAATGAAGACCCATCTCGATCTGCTAAAGATCTCGGCCGCC
GTGGCTTGATTTTATCGCAAGACCTTGAGAATGAACTCGGTACGATCCCT
TTGAATATCGACTCGGGTCTTGGAGTTTTTGATGCCTTCATCGCAAGTTT
TTCGATGATCATTGTTAGTGAGATTGGAGATGAGACTTTTATAATAGCAG
CACTTATGGCAATGCGTCATCCCAAGTCAACCGTTTTGTCGGGTGCGCTC
TCTGCTCTGTTTGTTATGACTGTGCTTTCTACTGGACTAGGTAGGATTGT
GCCGAATTTGATATCAAGGAAGCATACGAATAGTGCTGCTACAGTTCTGT
ATGCATTTTTTGGGCTGCGGTTACTATACATAGCTTGGATGTCAGATCCA
AAATCGGGTCAGAAGAA
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