CX054048

Overview
NameCX054048
Unique NameCX054048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX054048_ssr226 microsatellite CX054048_ssr226:226..237. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4271 contig Csv1_Contig4271:1..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 7.186e-63
Identity = 131/251 (52.19%), Postives = 160/251 (63.75%), Query Frame = 1
Query:   73 GGSLPVENVQALASNS-KEIPSRYIRPELD-DEQVLADGSLHIPVIDMSKLQDDDD--DELAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXXKKYGKWVPVK 813
            GGSLPVENVQ LA    K +P+RY+RPEL+ D+ V  D SL IPVID+S+L D     DELA+FH AC D GF QLINHGV E+VIEKMK D E+FF+LP +EK A  QLPN +EGYGQAFV S++QKLDW DM FL+T+P   R    WPT PTS R T+E+YS+ELQKV + L  +MAKNLG+E   L       +        P  +     +GL+PHSD+                 KK  KWVP+K
Sbjct:    9 GGSLPVENVQVLAGKELKNLPNRYVRPELEHDDVVPIDNSLEIPVIDLSRLLDQQYACDELAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESEILTKPLRT-VFNREDELLPSMSSCGEGLGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIK 258          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.203e-55
Identity = 113/253 (44.66%), Postives = 154/253 (60.87%), Query Frame = 1
Query:   79 SLPVENVQALASNSK--EIPSRYIRPELDDEQVLADGS--LHIPVIDMSKLQDDD--DDELAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFE--DGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXXKKYGKWVPVK 813
            S+ V +VQ +        +P RY+R + D  +V  D    + IP+IDM +L      D E+ +   ACK+ GF QL+NHG+    ++K+K++I++FF LP+EEK    Q P+ IEG+GQAFVVS+DQKLDW D+ F   QP  +R   L+P +P   R T+E YS E+Q V   L+  MA+ L I+P +L  LF+  D +Q +RMNYYPPC Q ++VIGLTPHSDSV                KK GKWVPVK
Sbjct:   11 SILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVK 263          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: FLS_SOLTU (Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.980e-29
Identity = 81/227 (35.68%), Postives = 127/227 (55.95%), Query Frame = 1
Query:   79 SLPVENVQALASNSK---EIPSRYIRPELDDEQV--LADGSLHIPVIDMSKLQDDDDDELAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFF-KLPLEEKMACAQLP--NSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKL--ASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSD 729
            ++ V  VQA++S +K    IPS YIR E +      L    L +PVID+S + DD++  + E   A K+ G  Q+INHG+P++VIE ++   +EFF ++P EEK   A+ P   S+EGYG +     + K  W D LF    P +      WP  P S R   EEY+  L+KV   + + ++  LG+E  ++  A+  ED +  +++NYYPPC + +  +G+  H+D
Sbjct:   14 TMEVARVQAISSITKCMDTIPSEYIRSENEQPAATTLQGVVLEVPVIDISNVDDDEEKLVKEIVEASKEWGIFQVINHGIPDEVIENLQKVGKEFFEEVPQEEKELIAKKPGAQSLEGYGTSLQKEIEGKKGWVDHLFHKIWPPSAINYRYWPKNPPSYREANEEYAKWLRKVADGIFRSLSLGLGLEGHEMMEAAGSEDIVYMLKINYYPPCPRPDLALGVVAHTD 240          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.298e-27
Identity = 71/233 (30.47%), Postives = 121/233 (51.93%), Query Frame = 1
Query:   85 PVENVQALASNSKE-IPSRYIRPELDDEQVLAD--------GSLHIPVIDMSKLQDDDDDELAEFH----LACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACA--QLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLF---EDGIQGIRMNYYPPCAQANRVIGLTPHSD 729
            P   V+ LA +  + IP  Y+RPE + + ++ +            +P ID+ ++   D++   + H     A  D G + LINHG+PE++I+++K   +EFF+LP+EEK A A  Q   +++GYG     +   +L+W D  F    P +    S+WPT P        EY+ +L+ +   +L +++  LG+E G+L       ED I  +++N+YP C Q    +G   H+D
Sbjct:    8 PSPRVEELARSGLDTIPKDYVRPEEELKSIIGNILAEEKSSEGPQLPTIDLEEMDSRDEEGRKKCHEELKKAATDWGVMHLINHGIPEELIDRVKAAGKEFFELPVEEKEAYANDQAAGNVQGYGSKLANNASGQLEWEDYFFHCVYPEHKTDLSIWPTKPPDYIPATSEYAKQLRALATKILSVLSIGLGLEKGRLEKEVGGAEDLIVQMKINFYPKCPQPELALGWEAHTD 240          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.298e-27
Identity = 84/260 (32.31%), Postives = 125/260 (48.08%), Query Frame = 1
Query:   88 VENVQALA-SNSKEIPSRYIRP--ELDD------EQVLADGSLHIPVIDMSKLQDDDD----DELAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACA--QLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKL---ASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXXKKYGKWVPVK 813
            VE V++LA S    IP  YIRP  EL+       E+   DG   +P ID+  ++ DD+    + + E   A  D G + LINHG+P  ++E++K   EEFF L +EEK   A  Q    I+GYG     +   +L+W D  F L  P   R  S+WP  P+       EY+  L+ +   + K ++  LG+EP +L       E+ +  +++NYYP C Q    +G+  H+D  A                + GKWV  K
Sbjct:    4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGP-QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYE-GKWVTAK 261          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: FLS_PETCR (Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.025e-26
Identity = 73/228 (32.02%), Postives = 120/228 (52.63%), Query Frame = 1
Query:   82 LPVENVQALASNSK---EIPSRYIRPELDDEQV--LADGSLHIPVIDMSKLQDDDDDELAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLP--NSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKL--ASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVA 738
            + VE VQA++  S+    IPS YIR E +   V  +    L +PVID+    + +++ +     A ++ G  Q++NHG+P+  I K++   +EFF+LP +EK   A+      +EGYG         K  W D LF +  P +    + WP  P   R   EEY++ L+ V   L + ++  +G+E  +L  AS  +D I  +++NYYPPC + +  +G+  H+D  A
Sbjct:    1 MEVERVQAISKMSRCMDTIPSEYIRSESEQPAVTTMQGVVLQVPVIDLGSSNNTEENLVELIAEASREWGIFQVVNHGIPDDAIAKLQKVGKEFFELPQQEKEVIAKPEGYQGVEGYGTKLQKELGGKKGWVDHLFHIIWPKSAVNYNFWPNNPPLYREANEEYAVALRGVVDKLFEALSLGIGLEKHELKKASGGDDLIYMLKINYYPPCPRPDLALGVVAHTDMSA 228          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.565e-25
Identity = 79/228 (34.65%), Postives = 124/228 (54.39%), Query Frame = 1
Query:   79 SLPVENVQALASNSK---EIPSRYIRPELDDEQV--LADGSLHIPVIDMSKLQDDDDDELAEFHL-ACKDSGFLQLINHGVPEKVIEKMKTDIEEFFK-LPLEEKMACAQLP--NSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKL--ASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSD 729
            ++ V  VQA+AS SK    IPS YIR E +      L    L +PVID   L+D D++++ +    A K+ G  QLINHG+P++ I  ++   +EFF+ +P EEK   A+ P  N IEGYG +     + K  W D LF    P +      WP  P S R   EEY   +++V   + K ++  LG+E  ++  A+  ++ +  +++NYYPPC + +  +G+  H+D
Sbjct:   12 TMEVARVQAIASLSKCMDTIPSEYIRSENEQPAATTLHGVVLQVPVID---LRDPDENKMVKLIADASKEWGIFQLINHGIPDEAIADLQKVGKEFFEHVPQEEKELIAKTPGSNDIEGYGTSLQKEVEGKKGWVDHLFHKIWPPSAVNYRYWPKNPPSYREANEEYGKRMREVVDRIFKSLSLGLGLEGHEMIEAAGGDEIVYLLKINYYPPCPRPDLALGVVAHTD 236          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: FLS_EUSGR (Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma grandiflorum GN=FLS PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.565e-25
Identity = 83/234 (35.47%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   82 LPVENVQALASNSK---EIPSRYIRPELDDEQVLADGS---LHIPVIDMSKLQDDDDDELAEF-HLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEK--MACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQG------IRMNYYPPCAQANRVIGLTPHSDSVA 738
            + V+ VQ +AS SK    IP+ YIR E +++ V++      L +PVID+S   D D+ ++      A K+ G  Q++NHG+P +VI K++   + FF+LP EEK  +A  +   SIEGYG       D K  W D LF    P +      WP  P + R   EEY+  LQ V   L K ++  L +EP      F+DG  G      +++NYYPPC + +  +G+  H+D  A
Sbjct:    1 MEVQRVQEIASLSKVIDTIPAEYIRSE-NEQPVISTVHGVVLEVPVIDLS---DSDEKKIVGLVSEASKEWGIFQVVNHGIPNEVIRKLQEVGKHFFELPQEEKELIAKPEGSQSIEGYGTRLQKEVDGKKGWVDHLFHKIWPPSAINYQFWPKNPPAYREANEEYAKRLQLVVDNLFKYLSLGLDLEPNS----FKDGAGGDDLVYLMKINYYPPCPRPDLALGVA-HTDMSA 225          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.767e-25
Identity = 74/260 (28.46%), Postives = 123/260 (47.31%), Query Frame = 1
Query:   97 VQALASNS-KEIPSRYIRPELD-------DEQVLADGSLHIPVIDMSKLQDDDDDELAEFHLACKDS--------GFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACA--QLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKL---ASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXXKKYGKWVPVK 813
            V++L+S+  + IP  YIRP+ +        E+   D    +P ID+  ++ +D+    E    C++         G + L+NHG+ + +I ++K   E FF LP+EEK   A  Q    I GYG     +   +L+W D  F L  P + R  ++WP  P+       EYS++L+ +   +L +++  LG+E G+L       E+ +   ++NYYP C Q    +G+  H+D  A                + GKWV  K
Sbjct:    9 VESLSSSGIQSIPKEYIRPQEELTSIGNVFEEEKKDEGPQVPTIDLKDIESEDEVVRREIRERCREELKKAAMEWGVMHLVNHGISDDLINRVKVAGETFFNLPMEEKEKYANDQASGKIAGYGSKLANNASGQLEWEDYFFHLIFPEDKRDMTIWPKTPSDYVPATCEYSVKLRSLATKILSVLSLGLGLEEGRLEKEVGGMEELLLQKKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYE-GKWVTAK 267          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.260e-24
Identity = 67/227 (29.52%), Postives = 116/227 (51.10%), Query Frame = 1
Query:   97 VQALA-SNSKEIPSRYIRPELD-------DEQVLADGSLHIPVIDMSKLQDDDDDELAEFHL---ACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACA--QLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKL---ASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSD 729
            V++LA S  + IP  Y+RP+ +        E+   D    +P ID+ ++  +D +   + H    A  + G + L+NHG+ +++I ++K   E FF  P+EEK   A  Q   +++GYG     S   +L+W D  F    P + R  S+WP  PT       EY+ +++ +   +L +++  LG+E G+L       ED +  +++NYYP C Q    +G+  H+D
Sbjct:   12 VESLAKSGIQAIPKEYVRPQEELNGIGNIFEEEKKDEGPQVPTIDLKEIDSEDKEIREKCHQLKKAAMEWGVMHLVNHGISDELINRVKVAGETFFDQPVEEKEKYANDQANGNVQGYGSKLANSACGQLEWEDYFFHCAFPEDKRDLSIWPKNPTDYTPATSEYAKQIRALATKILTVLSIGLGLEEGRLEKEVGGMEDLLLQMKINYYPKCPQPELALGVEAHTD 238          
The following BLAST results are available for this feature:
BLAST of CX054048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NCS1_COPJA7.186e-6352.19S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
SRG1_ARATH7.203e-5544.66Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
FLS_SOLTU3.980e-2935.68Flavonol synthase/flavanone 3-hydroxylase OS=Solan... [more]
LDOX_PERFR8.298e-2730.47Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
LDOX_ARATH8.298e-2732.31Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
FLS_PETCR7.025e-2632.02Flavonol synthase/flavanone 3-hydroxylase OS=Petro... [more]
FLS_PETHY1.565e-2534.65Flavonol synthase/flavanone 3-hydroxylase OS=Petun... [more]
FLS_EUSGR1.565e-2535.47Flavonol synthase/flavanone 3-hydroxylase OS=Eusto... [more]
LDOX_VITVI7.767e-2528.46Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
LDOX_PETHY2.260e-2429.52Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_9H08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9H08-O16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054048 ID=CX054048; Name=CX054048; organism=Citrus sinensis; type=EST; length=815bp
AAAAGCTAGGAGAATAATACCCCAAAAGAGAGTTGCGAAATGGAAACTGC
AGTTGACAAGAAAAATGTCTACGGCGGTTCTTTACCTGTAGAAAATGTTC
AAGCTCTTGCATCTAATTCCAAGGAAATCCCATCCCGGTACATCCGACCA
GAACTTGATGATGAGCAAGTTCTCGCTGATGGATCACTTCATATTCCAGT
GATTGATATGAGCAAGCTTCAGGACGATGATGATGATGAATTGGCAGAGT
TCCATTTGGCTTGCAAAGACTCGGGCTTCCTCCAGTTGATCAATCACGGG
GTACCAGAAAAAGTAATTGAGAAGATGAAAACTGACATTGAGGAATTCTT
TAAGCTGCCATTAGAGGAGAAGATGGCTTGCGCACAGCTGCCAAATAGCA
TTGAAGGTTATGGGCAAGCTTTCGTTGTCTCCAAGGATCAAAAGCTTGAT
TGGGGAGACATGCTTTTTCTTCTTACTCAACCTGCCAATATTAGAACCAC
GAGTCTCTGGCCTACCATCCCTACTTCTTTAAGAGCAACCATAGAGGAAT
ACTCTTTGGAACTGCAAAAGGTTACAATCTTTCTGTTGAAGTTGATGGCT
AAGAATTTGGGGATTGAACCTGGGAAACTTGCAAGCTTGTTTGAAGATGG
TATACAAGGAATAAGAATGAATTATTATCCACCATGTGCCCAGGCCAACA
GGGTTATTGGTCTCACTCCACACTCTGACTCTGTTGCATTAACATTGTTG
GTTCAAGTGAACCAAGTACAAGGTTTACAGGTAAAGAAATATGGCAAGTG
GGTACCAGTCAAACC
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