CX054044

Overview
NameCX054044
Unique NameCX054044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:544..1335. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 4.086e-79
Identity = 156/203 (76.85%), Postives = 168/203 (82.76%), Query Frame = -3
Query:  197 LVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 802
            LVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+SPEVLDL+EDDL+ KFA+GVSMVT+L+LAISYPTLAAAPHMF+NAYKNV+AVA+ T+YSFP+ADKVKEYL DPSKF                              ESD DMGFSLFD
Sbjct:  118 LVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKFAVAAVAAPAAASGAPAAAAKEEEKKEEPAEESDDDMGFSLFD 320          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 1.006e-77
Identity = 144/161 (89.44%), Postives = 157/161 (97.52%), Query Frame = -3
Query:  320 LVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 802
            LVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFASG+SMVT+LALA+SYPTLAAAPHMFINAYKN +A+A+ATEY+FPQA+KVKEYL DPSKF
Sbjct:  117 LVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.314e-77
Identity = 152/201 (75.62%), Postives = 168/201 (83.58%), Query Frame = -3
Query:  200 LVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLF 802
            LVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV+SVY+NGSV++PEVL+L+EDDLVEKFA+GVSM+TAL+LAISYPT+AAAPHMF+NAYKNV+AVALATEYSFPQA+ VKE+L DP+KF                             ESDGDMGF LF
Sbjct:  118 LVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF--AVAVAAPVSGESGGAVVAVAVEEEAAEESDGDMGFDLF 316          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 288.886 bits (738), Expect = 2.242e-77
Identity = 146/202 (72.28%), Postives = 166/202 (82.18%), Query Frame = -3
Query:  197 LVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 802
            LVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSE+ALLAKLGIRPFSYGLV+ +VY++GSV+SPEVLDL+EDDL+EKFASGVSMV +++LAISYPT+AAAPHMF+N YKNV+AVA+ TEYS+P ADK+KEYL DPSKF                             ESDGD+G SLFD
Sbjct:  118 LVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 6.523e-77
Identity = 142/161 (88.20%), Postives = 157/161 (97.52%), Query Frame = -3
Query:  320 LVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 802
            LVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFASG+SMVT+LALA+SYPTLAAAPHMFINAYKN +A+A+AT+Y+FPQA+KVKE+L DPSKF
Sbjct:  117 LVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 281.567 bits (719), Expect = 3.579e-75
Identity = 147/202 (72.77%), Postives = 164/202 (81.19%), Query Frame = -3
Query:  197 LVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 802
            LVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KG+KVGSSE+ALLAKLGIRPFSYGL V SVYE+GSV+SPEVLDLSE+DL+EKFA+GVSMV +L+LAISYPTLAA PHMFIN YKNV+AVA+ T+YS+P ADK+KEYL DPSKF                             ESD +MGFSLFD
Sbjct:  118 LVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSESALLAKLGIRPFSYGLQVTSVYEDGSVFSPEVLDLSEEDLIEKFATGVSMVASLSLAISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKF-AVAAPVAAGDSGASAAPKEEEKAAEPEEESDEEMGFSLFD 318          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.721e-69
Identity = 143/204 (70.10%), Postives = 155/204 (75.98%), Query Frame = -3
Query:  197 LVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 802
            LVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+ PEVLDL+EDDL+EKFA GVS       +   P  +AAPH+FINAYKNV+AVA+ATEYSFPQAD+VKEYL DPSKF                               ESD +MGF LFD
Sbjct:  118 LVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFKPEVLDLTEDDLLEKFAIGVSQCYFSDTSHFIPNPSAAPHVFINAYKNVLAVAVATEYSFPQADEVKEYLKDPSKFAAVAAAAAPAADSGAAPAAAAKAEKEEEPAEESDDEMGFGLFD 321          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.182e-56
Identity = 110/125 (88.00%), Postives = 122/125 (97.60%), Query Frame = -3
Query:  428 LVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPH 802
            LVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT VELI+KG+KVGSSEAALLAKLGIRPFSYGL V+SVY++GSV+SPEVLDL+EDDL+ +FA+GVSMVT+L+LAISYPTLAAAPH
Sbjct:  118 LVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITAVELIKKGEKVGSSEAALLAKLGIRPFSYGLNVESVYDDGSVFSPEVLDLTEDDLLARFATGVSMVTSLSLAISYPTLAAAPH 242          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.260e-52
Identity = 98/160 (61.25%), Postives = 124/160 (77.50%), Query Frame = -3
Query:  320 VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 799
            +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LIR GDKVG+SEA LL  L I PFSYGL++Q VY+NGSVYSPEVLD++ED L ++F  GV  + ++ L I YPTLA+ PH  IN YK V+ VA+ T+YSFP ADKVK +LADPS+F
Sbjct:  116 IAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRF 275          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.485e-52
Identity = 102/201 (50.75%), Postives = 134/201 (66.67%), Query Frame = -3
Query:  197 VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 799
            +AP DV VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD++E+ L ++F  GV  V ++ L I YPT+A+ PH  +N YK V+AVA+ T+Y+FP A+KVK +LADPS F                             ESD DMGF LFD
Sbjct:  116 IAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVLAVAVETDYTFPLAEKVKAFLADPSAFVAAAPVVVETAAPAAAAAPAKEAPKEESEESDEDMGFGLFD 316          
The following BLAST results are available for this feature:
BLAST of CX054044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RLA0_SOYBN4.086e-7976.8560S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA02_ARATH1.006e-7789.4460S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA01_ARATH1.314e-7775.6260S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA0_ORYSJ2.242e-7772.2860S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA03_ARATH6.523e-7788.2060S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA0_MAIZE3.579e-7572.7760S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_LUPLU1.721e-6970.1060S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_CHERU2.182e-5688.0060S acidic ribosomal protein P0 OS=Chenopodium rub... [more]
RLA0_ICTPU3.260e-5261.2560S acidic ribosomal protein P0 OS=Ictalurus punct... [more]
RLA0_CHICK9.485e-5250.7560S acidic ribosomal protein P0 OS=Gallus gallus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_9H05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9H05-O10-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054044 ID=CX054044; Name=CX054044; organism=Citrus sinensis; type=EST; length=804bp
AAATAACAAATAAATAATTTCTTAAACATGTAAAACTTGTATGGGACAGA
ATATATATTGTCCTAAATAAAGGATTATATAAAATAAAAAGGAAACTGAG
TCTACAAAAAGCATTAAGAAAATAAAGCAAACAAAACCAAAAACATAACC
ATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCACTTAGTCG
AACAAGCTGAAGCCCATATCTCCATCAGACTCCTCAGCAGGCTCTTCCTT
CTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACCGCCAGCAA
CCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGTACTCCTTC
ACTTTGTCAGCCTGAGGGAATGAATACTCAGTTGCAAGAGCAACAGCAAC
CACATTCTTGTATGCATTGATGAACATGTGTGGAGCAGCTGCCAGGGTTG
GGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATACACCTGAGGCG
AACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCTGGGCTGTA
GACAGAACCGTTTTCATAGACAGACTGGACAACAAGACCATAAGAGAAGG
GTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATCCCACCTTG
TCACCCTTCCTGATAAGCTCCACAGGTGTGATAATTTCAACAGTACCCTT
GTTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAAGAGGTCTGGGAGG
GGTCGAGACCTGTGTTGCCGGGAGGAACAACCACATCAATTGGAGCAACC
AAAC
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