DR403782

Overview
NameDR403782
Unique NameDR403782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6127 contig Csv1_Contig6127:1..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403782 vs. ExPASy Swiss-Prot
Match: CP058_HUMAN (UPF0420 protein C16orf58 OS=Homo sapiens GN=C16orf58 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.104e-36
Identity = 76/158 (48.10%), Postives = 103/158 (65.19%), Query Frame = 2
Query:  254 LQA-FVPEGFPGSVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPSAFAFVVCLGSLSRSFTGVASGATRAALTQHFALQNNAADISAK 724
            LQA F+P+GFP SV+PDY+P+Q+WDS+Q  ++ +   L+TQA+L  IGVG   ATV  AT  W ++D TGMLG ++F +++GS LD NAK WRL A             +P++P  F   V   +L++    VA GATRAALT H A +NN AD+SAK
Sbjct:   73 LQAVFLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPICFTMTVSTSNLAKCIVSVAGGATRAALTVHQARRNNMADVSAK 230          
BLAST of DR403782 vs. ExPASy Swiss-Prot
Match: CP058_PONAB (UPF0420 protein C16orf58 homolog OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.748e-36
Identity = 76/158 (48.10%), Postives = 103/158 (65.19%), Query Frame = 2
Query:  254 LQA-FVPEGFPGSVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPSAFAFVVCLGSLSRSFTGVASGATRAALTQHFALQNNAADISAK 724
            LQA F+P+GFP SV+PDY+P+Q+WDS+Q  ++ +   L+TQA+L  IGVG   ATV  AT  W ++D TGMLG ++F +++GS LD NAK WRL A             +P++P  F   V   +L++    VA GATRAALT H A +NN AD+SAK
Sbjct:   73 LQAVFLPQGFPDSVSPDYLPYQLWDSVQAFASGLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPICFTMTVSTSNLAKCIVSVAGGATRAALTVHQARRNNMADVSAK 230          
BLAST of DR403782 vs. ExPASy Swiss-Prot
Match: U420_DICDI (UPF0420 protein OS=Dictyostelium discoideum GN=DDB_G0277179 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.781e-35
Identity = 82/213 (38.50%), Postives = 126/213 (59.15%), Query Frame = 2
Query:   95 GISEVAKSKQQLIIEERNGSSSTKLFKTATIFAS--PSLSIHRSGSRFTHVWSRVLQAFVPEGFPGSVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPS-AFAFVVCLGSLSRSFTGVASGATRAALTQHFALQNNAADISAK 724
            G S+ + +K   IIE+   +S    F+ A+ +      L+   +  + +  ++ + + F+P G+P SVT DY  +Q WDS+Q L + I   L+T+A+L   GVG+ SATV  AT QW +RD  GM+G ++F + +G++LD N+K WR  A             SPLF S  F  + C+G +++S  GVA G T+A+LTQHFA ++N AD+SAK
Sbjct:    5 GKSQQSINKINCIIEKNQSNSIINKFQVASPYDDYDDRLNFLETIEKNSGFYNVLCELFLPNGYPDSVTTDYFGYQFWDSIQALCSTITGTLATRAILKGYGVGDSSATVASATTQWLIRDGMGMIGRIVFAWRKGTDLDCNSKKWRYTADILNNIGMAFEMISPLFSSQLFLPLSCIGLIAKSICGVAGGCTKASLTQHFAKRDNLADVSAK 217          
BLAST of DR403782 vs. ExPASy Swiss-Prot
Match: CP058_MOUSE (UPF0420 protein C16orf58 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.781e-35
Identity = 71/160 (44.38%), Postives = 101/160 (63.12%), Query Frame = 2
Query:  245 SRVLQAFVPEGFPGSVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPSAFAFVVCLGSLSRSFTGVASGATRAALTQHFALQNNAADISAK 724
            S +    +P+GFP SV+PDY+P+Q+WDS+Q  ++ +   L+TQA+L  +GVG   A+V  AT  W ++D TGMLG ++  +++GS LD NAK WRL A             +P++P  F   V   +L++   GVA GATRAALT H A +NN AD+SAK
Sbjct:   69 SGLRSVLLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTWLVKDSTGMLGRIILAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPMYPIFFTMTVSTSNLAKCIVGVAGGATRAALTMHQARRNNMADVSAK 228          
BLAST of DR403782 vs. ExPASy Swiss-Prot
Match: CP058_RAT (UPF0420 protein C16orf58 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.038e-35
Identity = 71/160 (44.38%), Postives = 101/160 (63.12%), Query Frame = 2
Query:  245 SRVLQAFVPEGFPGSVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPSAFAFVVCLGSLSRSFTGVASGATRAALTQHFALQNNAADISAK 724
            S +    +P+GFP SV+PDY+ +Q+WDS+Q  ++ +   L+TQA+L  +GVG   A+V  AT  W ++D TGMLG ++F +++GS LD NAK WRL A             +P++P  F   V   +L++   GVA GATRAALT H A +NN AD+SAK
Sbjct:   69 SGLRSVLLPQGFPDSVSPDYLQYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTWLVKDSTGMLGRIIFAWWKGSKLDCNAKQWRLFADILNDTAMFLEIMAPMYPIFFTMTVSTSNLAKCIVGVAGGATRAALTMHQARRNNMADVSAK 228          
The following BLAST results are available for this feature:
BLAST of DR403782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CP058_HUMAN2.104e-3648.10UPF0420 protein C16orf58 OS=Homo sapiens GN=C16orf... [more]
CP058_PONAB2.748e-3648.10UPF0420 protein C16orf58 homolog OS=Pongo abelii P... [more]
U420_DICDI1.781e-3538.50UPF0420 protein OS=Dictyostelium discoideum GN=DDB... [more]
CP058_MOUSE1.781e-3544.38UPF0420 protein C16orf58 homolog OS=Mus musculus P... [more]
CP058_RAT3.038e-3544.38UPF0420 protein C16orf58 homolog OS=Rattus norvegi... [more]
back to top
Properties
Property NameValue
Genbank descriptionCSAH-PNP1246E03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403782 ID=DR403782; Name=DR403782; organism=Citrus sinensis; type=EST; length=725bp
GGGGATGAAGCACAAAGCTGTTGCGAGGGAGTCAAAACAACCAAAACTCG
AGTTNNNGTGAGCTCTGTCTCAATCAATTTCGAAGTTAATGGAAGGTATA
AGTGAAGTAGCAAAATCAAAGCAACAGCTGATAATCGAAGAACGGAATGG
ATCATCTTCAACCAAGCTCTTCAAAACCGCTACAATTTTCGCATCTCCGT
CTCTCTCCATTCACAGATCCGGTAGTCGTTTTACGCATGTCTGGAGCCGA
GTTCTCCAAGCTTTTGTACCTGAGGGTTTTCCTGGCAGTGTGACTCCAGA
TTATGTCCCATTTCAAGTATGGGATTCTTTGCAGGGCCTTTCGACATACA
TTAGGACCATGCTTTCTACTCAAGCTCTTTTGAGTGCCATTGGCGTTGGT
GAGAAATCAGCTACTGTTATCGGTGCAACATTTCAGTGGTTTTTGAGGGA
TCTTACTGGAATGCTTGGAGGTGTCTTGTTCACATTTTATCAGGGCTCAA
ATCTGGATAGCAATGCTAAAATGTGGCGTCTGGTCGCAGATCTTATGAAT
GATCTTGGGATGTTGATGGACCTTCTTTCCCCTTTGTTTCCTTCAGCTTT
TGCATTTGTTGTTTGCTTAGGGAGCTTATCAAGATCATTCACTGGTGTTG
CAAGTGGAGCTACTAGAGCTGCTTTGACACAGCATTTTGCCCTCCAGAAT
AATGCTGCTGATATATCTGCCAAGG
back to top