DR403777
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DR403777 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 3.040e-46 Identity = 94/128 (73.44%), Postives = 104/128 (81.25%), Query Frame = 2 Query: 107 KPAPFTVEKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGVDGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 481 KPA FTVEK+AARGLPSL A+ SFKIVA G KIKTDKP+G++G MDLR+G+DASGRK KG GVY++VDKYGANVDGYSPIYNEN+WS SGDVY GG TGLAIWAVT VYNTSALAQ Sbjct: 13 KPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
BLAST of DR403777 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 6.773e-46 Identity = 90/128 (70.31%), Postives = 104/128 (81.25%), Query Frame = 2 Query: 107 KPAPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVDGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 481 KPAPF+VEK+A +GLPSLA++S F++ A G K+KTDKPYG++G M LR+G+DASGRK KGKGVYQFVDKYGANVDGYSPIYN +DWSPSGDVY GG TGLAIWAVT V+NTSALAQ Sbjct: 9 KPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
BLAST of DR403777 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 7.488e-45 Identity = 92/129 (71.32%), Postives = 103/129 (79.84%), Query Frame = 2 Query: 107 KPAPFTVEKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGVDGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 481 KPA FTVEK +ARGLPSL + +SF+IVA G KIKTDKP+GV+G MDLR+G+DASGRK KG GVY+FVDKYGANVDGYSPIYNE++WS SGDVY GG TGLAIWAVT VYNTSALAQ Sbjct: 13 KPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141
BLAST of DR403777 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 1.844e-43 Identity = 86/124 (69.35%), Postives = 101/124 (81.45%), Query Frame = 2 Query: 119 FTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVDGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 481 FT+EK++ +GLPSLA++S FK+VA G K+KTDKPYG++G M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT VYNTSALAQ Sbjct: 15 FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
BLAST of DR403777 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.196e-42 Identity = 85/124 (68.55%), Postives = 99/124 (79.84%), Query Frame = 2 Query: 119 FTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVDGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 481 FT+EK + +GLPSL ++S FK+VA G K+KTDKPYG++G M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT VYNTSALAQ Sbjct: 15 FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138
BLAST of DR403777 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.110e-39 Identity = 83/129 (64.34%), Postives = 97/129 (75.19%), Query Frame = 2 Query: 107 KPAPFTVE-KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVDGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 481 KP+ F V+ KSA +GLPSL+++S F + A G KIK DKP G+ GGM LR+G+D+SGRK GKGVYQFVDKYGANVDGYSPIYNE +W+P+GDVY GG TGL IWAVT VYNTSALAQ Sbjct: 12 KPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
BLAST of DR403777 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 5.566e-32 Identity = 69/119 (57.98%), Postives = 83/119 (69.75%), Query Frame = 2 Query: 125 VEKSAARGLPSLAKTSFKIVAKGGK-IKTDKPYGVDGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALA 478 +++S G+ A+ S IVAK K ++T +PYG GG+ +EG+DASGR AKGKGVYQF DKYGANVDGYSPIY +WSPSGDVY GG TGL +WAVT VY+TSALA Sbjct: 19 LQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137 The following BLAST results are available for this feature:
BLAST of DR403777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DR403777 ID=DR403777; Name=DR403777; organism=Citrus sinensis; type=EST; length=560bpback to top |