DR403777

Overview
NameDR403777
Unique NameDR403777
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2295 contig Csv1_Contig2295:1..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403777 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.040e-46
Identity = 94/128 (73.44%), Postives = 104/128 (81.25%), Query Frame = 2
Query:  107 KPAPFTVEKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGVDGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 481
            KPA FTVEK+AARGLPSL  A+ SFKIVA G  KIKTDKP+G++G MDLR+G+DASGRK KG GVY++VDKYGANVDGYSPIYNEN+WS SGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   13 KPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140          
BLAST of DR403777 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.773e-46
Identity = 90/128 (70.31%), Postives = 104/128 (81.25%), Query Frame = 2
Query:  107 KPAPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVDGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 481
            KPAPF+VEK+A +GLPSLA++S  F++ A G  K+KTDKPYG++G M LR+G+DASGRK KGKGVYQFVDKYGANVDGYSPIYN +DWSPSGDVY GG TGLAIWAVT           V+NTSALAQ
Sbjct:    9 KPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136          
BLAST of DR403777 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.488e-45
Identity = 92/129 (71.32%), Postives = 103/129 (79.84%), Query Frame = 2
Query:  107 KPAPFTVEKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGVDGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 481
            KPA FTVEK +ARGLPSL +   +SF+IVA G  KIKTDKP+GV+G MDLR+G+DASGRK KG GVY+FVDKYGANVDGYSPIYNE++WS SGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   13 KPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141          
BLAST of DR403777 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.844e-43
Identity = 86/124 (69.35%), Postives = 101/124 (81.45%), Query Frame = 2
Query:  119 FTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVDGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 481
            FT+EK++ +GLPSLA++S  FK+VA G  K+KTDKPYG++G M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   15 FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138          
BLAST of DR403777 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.196e-42
Identity = 85/124 (68.55%), Postives = 99/124 (79.84%), Query Frame = 2
Query:  119 FTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVDGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 481
            FT+EK + +GLPSL ++S  FK+VA G  K+KTDKPYG++G M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   15 FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138          
BLAST of DR403777 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.110e-39
Identity = 83/129 (64.34%), Postives = 97/129 (75.19%), Query Frame = 2
Query:  107 KPAPFTVE-KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVDGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 481
            KP+ F V+ KSA +GLPSL+++S  F + A G  KIK DKP G+ GGM LR+G+D+SGRK  GKGVYQFVDKYGANVDGYSPIYNE +W+P+GDVY GG TGL IWAVT           VYNTSALAQ
Sbjct:   12 KPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140          
BLAST of DR403777 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.566e-32
Identity = 69/119 (57.98%), Postives = 83/119 (69.75%), Query Frame = 2
Query:  125 VEKSAARGLPSLAKTSFKIVAKGGK-IKTDKPYGVDGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALA 478
            +++S   G+   A+ S  IVAK  K ++T +PYG  GG+  +EG+DASGR AKGKGVYQF DKYGANVDGYSPIY   +WSPSGDVY GG TGL +WAVT           VY+TSALA
Sbjct:   19 LQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137          
The following BLAST results are available for this feature:
BLAST of DR403777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSBR_ARATH3.040e-4673.44Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_TOBAC6.773e-4670.31Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM7.488e-4571.32Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU1.844e-4369.35Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC1.196e-4268.55Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SPIOL2.110e-3964.34Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_HORVU5.566e-3257.98Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246D21 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246D21 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403777 ID=DR403777; Name=DR403777; organism=Citrus sinensis; type=EST; length=560bp
GGGGACAGTTCAAAGCAAGAAGAAACCCAGAAAATTAACGAAAACAAAAC
AGGAGAGCACAGCAAAGCAAATGGCAGCCTCAGTGATGGCTTCTTCGTTG
AGCCTGAAACCAGCTCCTTTCACTGTGGAGAAATCAGCAGCGAGAGGCCT
TCCCTCTCTTGCTAAAACTTCATTCAAAATTGTGGCTAAAGGCGGCAAGA
TCAAAACCGACAAACCCTATGGAGTAGATGGTGGTATGGATTTGAGGGAA
GGTCTGGATGCATCCGGCAGGAAGGCTAAGGGGAAAGGTGTTTACCAATT
TGTTGACAAGTACGGTGCCAATGTTGATGGATACAGTCCTATCTACAATG
AGAACGACTGGTCTCCCAGTGGTGATGTCTATACTGGTGGTGCAACTGGC
TTGGCAATCTGGGCTGTTACTCTTGCCGGTCTTCTTGCAGGAGGAGCACT
TCTCGTCTACAACACAAGTGCTTTGGCACAGTAGATGAATTTCAATCAAT
GTTACATTATTATCTCTATTTTGTATAACTTGTCAATGTTGCTGTTAAAT
GTACCTTCCC
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