CX054001

Overview
NameCX054001
Unique NameCX054001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX054001 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 408.297 bits (1048), Expect = 2.923e-113
Identity = 184/206 (89.32%), Postives = 196/206 (95.15%), Query Frame = -1
Query:  260 YDPFREGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELN 877
            YDP+R+GADFVRGYPFS+REG PTAVSHGLWLNIPDYDAPTQLVKP ERNTRYVD V+TIPKGTLFPMCGMNLAFDR LIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHL LG+KTGLPYI+HSKASNPFVNLKKEY GIFWQE+IIPFFQA TLPKECTTVQ+CY+ELSKQVK+KLS +DPYF KL +AMVTWIEAWDELN
Sbjct:  137 YDPYRDGADFVRGYPFSMREGAPTAVSHGLWLNIPDYDAPTQLVKPHERNTRYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLGLGIKTGLPYIWHSKASNPFVNLKKEYNGIFWQEEIIPFFQAATLPKECTTVQQCYLELSKQVKKKLSSIDPYFTKLGEAMVTWIEAWDELN 342          
BLAST of CX054001 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 4.987e-113
Identity = 185/207 (89.37%), Postives = 197/207 (95.17%), Query Frame = -1
Query:  257 YDPFREGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNP 877
            YDP+REGADFVRGYPFS+REG  TAVSHGLWLNIPDYDAPTQLVKPRERNTRYVD V+TIPKGTLFPMCGMNLAFDR LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICDHL LGVKTGLPYI+HSKASNPFVNLKKEYKGI+WQE+IIPF Q+ TLPK+CT+VQ+CY+ELSKQVKEKLS +DPYF KLADAMVTWIEAWDELNP
Sbjct:  141 YDPYREGADFVRGYPFSMREGAATAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEEIIPFSQSATLPKDCTSVQQCYLELSKQVKEKLSTIDPYFTKLADAMVTWIEAWDELNP 347          
BLAST of CX054001 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 400.593 bits (1028), Expect = 6.096e-111
Identity = 184/207 (88.89%), Postives = 193/207 (93.24%), Query Frame = -1
Query:  257 YDPFREGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNP 877
            YDP+REGADFVRGYPFSLREG  TAVSHGLWLNIPDYDAPTQLVKP+ERN RYVD V+TIPKGTLFPMCGMNLAFDR LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICDHL+LGVKTGLPYI+HSKASNPFVNLKKEYKGIFWQEDIIPFFQ VT+PK+C TVQ+CYI LS QVKEKL  +DPYF KL DAMVTWIEAWDELNP
Sbjct:  147 YDPYREGADFVRGYPFSLREGAHTAVSHGLWLNIPDYDAPTQLVKPKERNERYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHLSLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEDIIPFFQNVTIPKDCDTVQKCYIYLSGQVKEKLGTIDPYFVKLGDAMVTWIEAWDELNP 353          
BLAST of CX054001 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 399.823 bits (1026), Expect = 1.040e-110
Identity = 182/206 (88.35%), Postives = 194/206 (94.17%), Query Frame = -1
Query:  260 YDPFREGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELN 877
            YDP+REG DFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKP ERNTR+VD VLTIPKG+LFPMCGMNLAF+R LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICDHL  GVKTGLPYI+HSKASNPFVNLKKEYKGIFWQE+IIPFFQA TL K+CT+VQ+CYIELSKQVKEKL  +DPYF KLADAMVTW+EAWDE+N
Sbjct:  140 YDPYREGTDFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPHERNTRFVDAVLTIPKGSLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGYGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQAATLSKDCTSVQKCYIELSKQVKEKLGTIDPYFIKLADAMVTWVEAWDEIN 345          
The following BLAST results are available for this feature:
BLAST of CX054001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UPTG1_SOLTU2.923e-11389.32Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
UPTG2_SOLTU4.987e-11389.37Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
UPTG_MAIZE6.096e-11188.89Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG_PEA1.040e-11088.35Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_9F05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9F05-K10-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054001 ID=CX054001; Name=CX054001; organism=Citrus sinensis; type=EST; length=877bp
TTTGAAAGCAAAATCAACCACATATGTTTTATTCCTATAAGTTCAGAGCA
TGAAGTAAATAAATAAAATTACACTGACCAATCTGTAAAATCCAAATGTC
GGACCAAATTGGGTGCCAAAAAGTGCATAAAAATTTGTAAAAATACAGCA
GCTAATGACTATAAATTACTCCCTAATATGAAGGAAAATATTGTCGTCCG
CAGTTAATCAAAAGTTTCTCTACTTAGGCTTTGCCATTGGCCACTGCAGC
TCCAGCTGGGTTAAGCTCATCCCACGCTTCAATCCAGGTCACCATGGCAT
CTGCCAACTTGTCGAAGTAGGGATCTACTTTGCTAAGCTTTTCCTTGACC
TGTTTCGACAGTTCAATGTAGCACTCTTGCACAGTAGTGCACTCTTTTGG
AAGTGTCACGGCTTGGAAGAATGGGATGATATCTTCCTGCCAGAAGATGC
CCTTGTACTCTTTCTTTAGGTTCACAAACGGGTTGCTTGCTTTGCTGTGG
AAGATATAAGGCAGACCAGTCTTTACTCCCAAATTCAAATGGTCACATAT
CACCTTGGTGCACCAGCCAGCCCACATATCATCATAACGTCCAATTGGCT
GACCGTCGCCCATGAGGCCAAAATACATTGCAGGGCCAATCAAGTGACGG
TCGAATGCCAAATTCATACCACACATGGGGAAGAGAGTGCCCTTAGGAAT
GGTCAAAACCATATCCACATACCTAGTGTTCCTCTCCCGTGGCTTCACAA
GCTGTGTAGGTGCATCATAGTCCGGAATGTTGAGCCAGAGGCCATGAGAA
ACAGCAGTTGGGACACCCTCGCGGAGACTGAAAGGGTATCCACGGACAAA
ATCTGCACCTTCTCTGAAGGGATCATA
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