DR403724

Overview
NameDR403724
Unique NameDR403724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8020 contig Csv1_Contig8020:1..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403724 vs. ExPASy Swiss-Prot
Match: PME6_ARATH (Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.242e-24
Identity = 53/70 (75.71%), Postives = 56/70 (80.00%), Query Frame = 2
Query:    5 LPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL 214
            LPWSGSFALSTLYYGEY N G GAS SGRVKW GYHVI++  EA KFTV NFL GN WI ATGVP + GL
Sbjct:  485 LPWSGSFALSTLYYGEYGNTGAGASVSGRVKWPGYHVIKTVTEAEKFTVENFLDGNYWITATGVPVNDGL 554          
BLAST of DR403724 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.242e-24
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 2
Query:    5 LPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL 214
            + WSG FAL+TLYY EYMN G G+ST+ RVKW GYHV+ SP +  +FTVGNF+AGNSW+PAT VPF SGL
Sbjct:  441 MEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 510          
BLAST of DR403724 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.376e-21
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 2
Query:    5 LPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL 214
            L W+G FAL +LYYGEYMN G G+    RVKW GYHVI S VEA KFTV  F++G+SW+P+TGV F SGL
Sbjct:  516 LEWNGPFALDSLYYGEYMNKGLGSGIGQRVKWPGYHVITSTVEASKFTVAQFISGSSWLPSTGVSFFSGL 585          
BLAST of DR403724 vs. ExPASy Swiss-Prot
Match: PME36_ARATH (Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.376e-21
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 2
Query:   11 WSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL 214
            WSGS+ALSTLYYGE+MN G GA T  RV W G+HV+R   EA  FTV  F+ G+SWIP TGVPF +G+
Sbjct:  452 WSGSYALSTLYYGEFMNTGAGAGTGRRVNWPGFHVLRGEEEASPFTVSRFIQGDSWIPITGVPFSAGV 519          
BLAST of DR403724 vs. ExPASy Swiss-Prot
Match: PME35_ARATH (Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.207e-20
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 2
Query:    8 PWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL 214
            PWS +FAL TLYYGE+ N G G+S SGRV W+GYH   +  EA  FTV  F+ GNSW+P+TGV FDSGL
Sbjct:  460 PWSSNFALKTLYYGEFGNSGPGSSVSGRVSWAGYHPALTLTEAQGFTVSGFIDGNSWLPSTGVVFDSGL 528          
BLAST of DR403724 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.571e-19
Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 2
Query:    8 PWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL 214
            PW G+FAL TLYYGEY N G GA+TSGRV W G+ VI S  EA  FT G+F+AG SW+ AT  PF  GL
Sbjct:  251 PWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL 319          
BLAST of DR403724 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.571e-19
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 2
Query:    5 LPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL 214
            L W+G+FAL TLYYGEYMN G GAS   RVKW GYHV+ +  EA  FTV   + GN W+P+TG+ F +GL
Sbjct:  456 LEWNGNFALDTLYYGEYMNSGPGASLDRRVKWPGYHVLNTSAEANNFTVSQLIQGNLWLPSTGITFIAGL 525          
BLAST of DR403724 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.679e-19
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2
Query:    5 LPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL 214
            L W G+FAL TL+Y E+ N G GASTSGRV W G+ V+ S  EA KFTVG FLAG SWIP++ VPF SGL
Sbjct:  443 LEWDGNFALKTLFYAEFQNTGPGASTSGRVTWPGFRVLGSASEASKFTVGTFLAGGSWIPSS-VPFTSGL 511          
BLAST of DR403724 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.499e-19
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 2
Query:   11 WSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL 214
            W G+FAL+TL+YGE+ N G GA TSGRVKW G+ VI S  EA  FT G+F+AG+SW+ +TG PF  GL
Sbjct:  517 WDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584          
BLAST of DR403724 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.570e-19
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 2
Query:   11 WSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL 214
            W G+FAL+TL+YGE+ N G GA TSGRVKW G+ VI S  EA  FT G+F+AG+SW+ +TG PF  GL
Sbjct:  517 WDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584          
The following BLAST results are available for this feature:
BLAST of DR403724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PME6_ARATH1.242e-2475.71Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME2_CITSI1.242e-2468.57Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME61_ARATH6.376e-2164.29Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME36_ARATH6.376e-2163.24Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME35_ARATH9.207e-2062.32Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME_DAUCA1.571e-1962.32Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME32_ARATH1.571e-1958.57Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME17_ARATH2.679e-1964.29Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME3_CITSI3.499e-1960.29Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI4.570e-1960.29Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246B08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403724 ID=DR403724; Name=DR403724; organism=Citrus sinensis; type=EST; length=520bp
GGGGTTGCCGTGGAGTGGGAGTTTTGCTTTGAGCACTCTTTATTATGGTG
AGTATATGAACATCGGAACCGGTGCAAGCACTAGTGGGAGGGTGAAATGG
TCCGGGTATCATGTTATACGGAGCCCCGTGGAGGCCGGGAAGTTTACGGT
TGGAAACTTTTTGGCCGGAAACTCTTGGATTCCGGCGACCGGAGTGCCGT
TTGATTCTGGTTTGTGAATTATCATCAGGCGCACGCAGTTTGCTTTTAAT
AATGTTAGGGAAACAATAGTGTTTGTCGTCATTTGTAAATGGGAAAAGGG
ATTTAACGTGTTCAAATCGTCGTATAGTTTTTGTTGGCTGTTTTCATTTA
CACATATCATATACATATACTAGGAGACGATGCTTTACCTGCACTTGTTG
TTAAAGAATAAAAGAAATTTGTATGATAGCCTAATCTTTTATCAATTTGT
AATATATGTAATTGTGAAAATAAAAGTGATATAATAGCTTTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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