DR403723

Overview
NameDR403723
Unique NameDR403723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11270 contig Csv1_Contig11270:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR403723 vs. ExPASy Swiss-Prot
Match: RSBQ_BACSU (Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis GN=rsbQ PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.092e-29
Identity = 63/126 (50.00%), Postives = 85/126 (67.46%), Query Frame = 3 
Query:  132 EFLLEALNVRVVGRGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFTND 509
            E +L   +V+V G G++ I+F+ GFG DQSVW+ V P+F   +RVI FD + SG  D   YD  RY TLDGY  D+L   +AL++    FVGHSV A+IG+LA+I RP LFS L+++G SP + ND
Sbjct:    3 EAILSRNHVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLND 128
The following BLAST results are available for this feature:
BLAST of DR403723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RSBQ_BACSU1.092e-2950.00Sigma factor sigB regulation protein rsbQ OS=Bacil... [more]
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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246B07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403723 ID=DR403723; Name=DR403723; organism=Citrus sinensis; type=EST; length=718bp
GGCCGGGGGCACCAACAATCAATATTNNNNTCTTTCTAACCAAGTAATAT
ATTTTCAATATTAATTTCGTTCACTCATAAATTAATTTTAATAAATTTGC
TATTAAAATGGCCGACTACAATAACCGTGGCGAATTTCTCTTGGAAGCAC
TAAATGTTCGAGTAGTAGGTCGAGGGCAGTCAATCATCGTGTTTTCCCAC
GGATTTGGGTCTGACCAATCCGTATGGAGTCGCGTTATCCCTAGTTTCAC
TCGTGCTTATCGTGTAATCAGCTTTGACCTAATGTGCTCAGGAAGCTGCG
ACCCAACAAATTATGATTTCCAAAGATACGCCACTCTTGATGGTTACGTT
GATGACTTGCTCAGCTTTCTCGACGCCCTTGAAATTGATCGTTGCGCCTT
TGTTGGTCATTCAGTATCGGCTATGATTGGTCTCTTAGCCGCCATTCACC
GTCCCAACCTTTTCTCAAGACTCATTCTCATTGGCGGTTCTCCAAGGTTC
ACGAATGATGGGAATTATATTNGGGGGTATTGATCCAGCTCACATGGAAN
NNGTGTTCCGAAGAATGGAGAGCAATTATGAATCCTGGGTCGCAGGCTTT
GTACCAATGGCACTTGGTGCTGACGTGCCTGACATGGCTCTCCAAGAATT
CAGCAGGACTTTGTTCAGCATGAGGCCTGACATTGCCTTGCATGTCGCAA
GAACAGCGTTTGCAGCTG
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