DR403718

Overview
NameDR403718
Unique NameDR403718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403718 vs. ExPASy Swiss-Prot
Match: CLPB_GLOVI (Chaperone protein clpB OS=Gloeobacter violaceus GN=clpB PE=3 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 8.415e-77
Identity = 141/226 (62.39%), Postives = 175/226 (77.43%), Query Frame = 1
Query:    4 ETEXXFKALLEQKNGLXXRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGKPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF 681
            E+E  FKALL+Q  GL   IF+K GV+ T+L E  E+FI RQPK+        LGR L+AL+ R+  ++KEYGD F+S+EHLVL F +D RFG+Q+ R+F +    LK+ +  +RG Q V  Q+PE  YE+L+KYG+DLT +A  GKLDPVIGRD+EIRR IQILSRRTKNNPVLIG+PGVGKTAI+EGLAQRIV GDVP++L  RKLI+LDMGALIAG+KYRGEF
Sbjct:   33 ESEHLFKALLDQDGGLAGSIFTKAGVNLTKLGERVEQFINRQPKLTNPGQSVYLGRSLDALLDRAEGFRKEYGDDFISIEHLVLAFAKDVRFGQQILREFSLDEAKLKAVVAQVRGNQKVTSQNPESTYESLDKYGRDLTQLAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIVSGDVPESLQGRKLIALDMGALIAGSKYRGEF 258          
BLAST of DR403718 vs. ExPASy Swiss-Prot
Match: CLPB1_THEEB (Chaperone protein clpB 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.707e-75
Identity = 144/226 (63.72%), Postives = 177/226 (78.32%), Query Frame = 1
Query:    4 ETEXXFKALLEQKNGLXXRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGKPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF 681
            E+E   K+LLEQ+ GL  +IF K G    R+ + T++FI RQPK+    +G  LG+ L+ L+ R+ E +K++GD F+S+EHLVL F QD RFGK+LF+D  +S   L+ AI+ IRG Q V DQ+PEGKY ALEKYG+DLT +A  GKLDPVIGRDDEIRR IQILSRRTKNNPVLIG+PGVGKTAI+EGLAQRIV  DVP +L +R+LI+LDMGALIAGAKYRGEF
Sbjct:   33 ESEHLMKSLLEQE-GLATQIFQKAGCSVQRIRDLTDEFISRQPKI-SHPSGVYLGQSLDKLLDRAEEARKQFGDEFISIEHLVLAFAQDDRFGKKLFQDIGLSEKVLREAIQQIRGSQKVTDQNPEGKYAALEKYGRDLTLLARQGKLDPVIGRDDEIRRVIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIVARDVPDSLRDRQLIALDMGALIAGAKYRGEF 256          
BLAST of DR403718 vs. ExPASy Swiss-Prot
Match: CLPB_PLEBO (Chaperone protein clpB OS=Plectonema boryanum GN=clpB PE=2 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 4.618e-75
Identity = 146/227 (64.32%), Postives = 176/227 (77.53%), Query Frame = 1
Query:    4 ETEXXFKALLEQKNGLXXRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQI-SLPTLKSAIEAIRGRQSVIDQDPEGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGKPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF 681
            ETE   KALLEQ +GL   IF+K+ V   R+ + T+ FI+RQPKV G       GR  +AL+ R+ EY+K++ DSF+S+EHL+LG+ QD RFGK L  +F+      L++AIE +RG Q V DQ PE KYE+LEKYG+DLT  A  GKLDPVIGRDDEIRR IQILSRRTKNNPVLIG+PGVGKTAI+EGLAQRI+ GDVPQ+L +RKLI+LDMGALIAGAKYRGEF
Sbjct:   33 ETEHLMKALLEQ-DGLAISIFNKLAVPVDRVRDRTDDFIRRQPKVSGSGTSVYWGRRADALLXRAEEYRKQFEDSFISIEHLLLGYAQDSRFGKALLSEFRYPDEAKLRNAIEQVRGNQKVTDQTPENKYESLEKYGRDLTQYAREGKLDPVIGRDDEIRRTIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRILSGDVPQSLKDRKLIALDMGALIAGAKYRGEF 258          
BLAST of DR403718 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNE7 (Chaperone protein clpB 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB1 PE=2 SV=3)

HSP 1 Score: 280.796 bits (717), Expect = 4.618e-75
Identity = 141/226 (62.39%), Postives = 177/226 (78.32%), Query Frame = 1
Query:    4 ETEXXFKALLEQKNGLXXRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGKPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF 681
            E+E  F ALL Q+ GL   I  K G++  +L + TE+FI RQPKV G      LGR L+ L+ ++ +++K++GD F+SVEHL+L F +D RFG+ L ++F++    L+  I+ IRG Q V DQ+PEGKYEALEKYG+DLT MA  GKLDPVIGRDDEIRR IQILSRRTKNNPVLIG+PGVGKTAI+EGLAQRI+ GDVPQ+L +R+LI+LDMGALIAGAK+RGEF
Sbjct:   33 ESEHLFLALL-QEPGLALNILKKAGLEAAQLQQFTERFIARQPKVSGGNQSVYLGRSLDQLLDQADQFRKDFGDEFISVEHLILSFPRDSRFGRLLSQEFKVDEKQLRQIIQQIRGSQKVTDQNPEGKYEALEKYGRDLTEMARRGKLDPVIGRDDEIRRTIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGDVPQSLKDRRLIALDMGALIAGAKFRGEF 257          
BLAST of DR403718 vs. ExPASy Swiss-Prot
Match: CLPB2_ANASP (Chaperone protein clpB 2 OS=Anabaena sp. (strain PCC 7120) GN=clpB2 PE=3 SV=2)

HSP 1 Score: 280.026 bits (715), Expect = 7.877e-75
Identity = 139/226 (61.50%), Postives = 180/226 (79.65%), Query Frame = 1
Query:    4 ETEXXFKALLEQKNGLXXRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGKPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF 681
            E+E   KALLEQ +GL   I +K GV+  ++ + TE++IQRQPKV G +    LGR L+ L+ R+  ++K++ D ++S+EHL+L + +D RFGK LF++F +    LK+ I+ +RG Q+V DQ+PEGKY++LEKYG+DLT  A  G+LDPVIGRDDEIRR IQILSRRTKNNPVLIG+PGVGKTAI+EGLAQRIV GDVPQ+L +RKLISLDMGA+IAGAK+RGEF
Sbjct:   33 ESEHLMKALLEQ-DGLASGILTKAGVNLQKISDRTEQYIQRQPKVSGNSTSVYLGRSLDTLLDRAEAHRKDFQDEYISIEHLLLAYPKDDRFGKGLFQEFALDESKLKNIIKQVRGSQTVTDQNPEGKYQSLEKYGRDLTEAARKGQLDPVIGRDDEIRRTIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIVAGDVPQSLKDRKLISLDMGAMIAGAKFRGEF 257          
BLAST of DR403718 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNY3 (Chaperone protein clpB 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 9.964e-70
Identity = 134/226 (59.29%), Postives = 166/226 (73.45%), Query Frame = 1
Query:    4 ETEXXFKALLEQKNGLXXRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGKPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF 681
            ETE    ALLEQ NGL   IF+K G    R+ +    FI +QPK+   +    LGR L+ L+  +   K +YGD ++S+EHL+  + QD R GK L+R+  ++   L   I+ IRG Q V DQ+PEGKYE+LEKYG+DLT +A  GKLDPVIGRD+E+RR IQILSRRTKNNPVLIG+PGVGKTAI+EGLAQRI+  DVP++L +RKLISLDMGALIAGAKYRGEF
Sbjct:   33 ETEHLLSALLEQ-NGLATSIFNKAGASIPRVNDQVNSFIAQQPKLSNPSESIYLGRSLDKLLDNAEIAKSKYGDDYISIEHLMAAYGQDDRLGKNLYREIGLTENKLAEIIKQIRGTQKVTDQNPEGKYESLEKYGRDLTELAREGKLDPVIGRDEEVRRTIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIINHDVPESLRDRKLISLDMGALIAGAKYRGEF 257          
BLAST of DR403718 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNPX (Chaperone protein clpB 1 OS=Synechococcus sp. (strain WH8102) GN=clpB1 PE=3 SV=2)

HSP 1 Score: 259.61 bits (662), Expect = 1.102e-68
Identity = 137/226 (60.62%), Postives = 163/226 (72.12%), Query Frame = 1
Query:    4 ETEXXFKALLEQKNGLXXRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGKPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF 681
            ETE    ALL Q NGL  RI SK GVD T    + E  +QR P +        LGR L   + R+ + +  +GDSF+++EHL+L   +D R G+QL     ++  TLK AI A+RG Q+V DQ+PE  YE+L KYG+DLTA A  G+LDPVIGRD+EIRR IQILSRRTKNNPVLIG+PGVGKTAI EGLAQRIV GDVPQAL NR+LI+LDMGALIAGAKYRGEF
Sbjct:   32 ETEHLLLALLRQ-NGLAGRILSKTGVDVTTFEASVEGHLQRLPSLGSAPDSVFLGRSLNKALDRAEQRRDGFGDSFIAIEHLLLALAEDDRCGRQLLSQAGVTTNTLKEAITAVRGNQTVTDQNPEATYESLAKYGRDLTAAARDGQLDPVIGRDEEIRRTIQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPQALQNRQLITLDMGALIAGAKYRGEF 256          
BLAST of DR403718 vs. ExPASy Swiss-Prot
Match: CLPB_PROMM (Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.591e-67
Identity = 134/226 (59.29%), Postives = 162/226 (71.68%), Query Frame = 1
Query:    4 ETEXXFKALLEQKNGLXXRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGKPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF 681
            ETE    +LL+Q N L  RI  K GV    L  A E  +Q QP +        LG+ +  L+ ++ ++K+ +GDSF+S+EHL+L    D R G++L     +    LK AI+A+RG Q V DQ+PEG YE+LEKYG+DL+A A  GKLDPVIGRDDEIRR IQILSRRTKNNPVLIG+PGVGKTAI EGLAQRIV GDVP AL NR+LI+LDMGALIAGAKYRGEF
Sbjct:   32 ETEHLLLSLLQQ-NALAGRILEKAGVSIGNLQTAVEAHLQEQPTMQAAPDSVYLGKGVNDLLDQAEKHKQAFGDSFISIEHLLLALAGDNRCGRKLLNQAGVDAGKLKVAIDAVRGNQKVTDQNPEGTYESLEKYGRDLSAAAREGKLDPVIGRDDEIRRTIQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPAALQNRQLITLDMGALIAGAKYRGEF 256          
BLAST of DR403718 vs. ExPASy Swiss-Prot
Match: CLPB1_ANASP (Chaperone protein clpB 1 OS=Anabaena sp. (strain PCC 7120) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.918e-66
Identity = 123/226 (54.42%), Postives = 167/226 (73.89%), Query Frame = 1
Query:    4 ETEXXFKALLEQKNGLXXRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGKPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF 681
            + E    AL+E    L  RI  +  +D  RL +  E F QRQ KV G++    LGR L+ ++ R+ E ++   D ++SVEH++L F  D+R G+++ + F +    ++++I+A+RG Q V DQ+PE +YEAL+K+G+DLT  A +GKLDPVIGRDDEIRR IQ+LSRR+KNNPVLIG+PGVGKTAI+E LAQRIV GDVP++L NR+LISLD+G+LIAGAKYRGEF
Sbjct:   33 DVEHLILALIEDPTSLAVRILGRAEIDPIRLQQQLEAFTQRQTKV-GKSDQLYLGRSLDVMLDRAEEIRERMKDGYISVEHMLLAFVDDERVGRKVLKGFNVDSAKIEASIKAVRGSQKVTDQNPESRYEALQKFGRDLTEQAKSGKLDPVIGRDDEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEALAQRIVNGDVPESLKNRQLISLDIGSLIAGAKYRGEF 257          
BLAST of DR403718 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNY3 (Chaperone protein clpB 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.489e-65
Identity = 130/226 (57.52%), Postives = 161/226 (71.24%), Query Frame = 1
Query:    4 ETEXXFKALLEQKNGLXXRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGSMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGKPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF 681
            E E    ALLEQ  GL  RIF +  VD   L +  E F  RQPK         LGR L+ ++ R+   +  + D F+SVEHL++GF +D R G++  R F +    L+ AI+AIRG Q V + + E KYEAL+KYG+DLT  A  GKLDPVIGRD+EIRR IQ+LSRR+KNNPVLIG+PGVGKTAI+EGLAQRI+ GDVP++L NR+LISLDMG+LIAGAKYRGEF
Sbjct:   33 EVEHILLALLEQDMGLAARIFQRAAVDGEGLRQQLEIFTNRQPKQ-AYVEQLYLGRSLDVMLDRADAARSSWEDKFISVEHLLVGFAEDDRVGRKTLRAFNLDPQDLELAIKAIRGSQKVTEPNQEEKYEALDKYGRDLTEQARQGKLDPVIGRDEEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEGLAQRIINGDVPESLKNRQLISLDMGSLIAGAKYRGEF 257          
The following BLAST results are available for this feature:
BLAST of DR403718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPB_GLOVI8.415e-7762.39Chaperone protein clpB OS=Gloeobacter violaceus GN... [more]
CLPB1_THEEB2.707e-7563.72Chaperone protein clpB 1 OS=Thermosynechococcus el... [more]
CLPB_PLEBO4.618e-7564.32Chaperone protein clpB OS=Plectonema boryanum GN=c... [more]
CLPB1_SYNE74.618e-7562.39Chaperone protein clpB 1 OS=Synechococcus elongatu... [more]
CLPB2_ANASP7.877e-7561.50Chaperone protein clpB 2 OS=Anabaena sp. (strain P... [more]
CLPB2_SYNY39.964e-7059.29Chaperone protein clpB 2 OS=Synechocystis sp. (str... [more]
CLPB1_SYNPX1.102e-6860.62Chaperone protein clpB 1 OS=Synechococcus sp. (str... [more]
CLPB_PROMM1.591e-6759.29Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB1_ANASP3.918e-6654.42Chaperone protein clpB 1 OS=Anabaena sp. (strain P... [more]
CLPB1_SYNY31.489e-6557.52Chaperone protein clpB 1 OS=Synechocystis sp. (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAH-PNP1246B01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403718 ID=DR403718; Name=DR403718; organism=Citrus sinensis; type=EST; length=681bp
GGGGAGACTGAACANNNNTTTAAGGCACTGTTAGAGCAAAAGAATGGGCT
TGNNNGAAGGATCTTTTCCAAGGTTGGAGTTGATAATACACGTCTTCTGG
AAGCCACTGAGAAGTTCATCCAACGTCAACCAAAGGTGCTTGGCGAAACA
GCTGGTTCTATGTTAGGACGTGATTTGGAAGCCCTTATCCAGCGAAGCAG
GGAATACAAGAAAGAATATGGAGACTCATTTGTTTCTGTTGAGCATTTGG
TTCTTGGGTTCACCCAGGATCAACGATTTGGGAAGCAATTGTTCAGGGAT
TTTCAAATATCCTTGCCGACACTGAAATCTGCAATTGAGGCTATAAGGGG
ACGTCAATCAGTTATTGACCAAGATCCTGAGGGTAAGTATGAAGCACTGG
AGAAATATGGAAAAGATCTGACAGCTATGGCAAGTGCAGGGAAGCTAGAC
CCAGTGATAGGGAGAGATGATGAAATACGGAGGTGTATCCAAATTCTTTC
CAGGAGAACAAAGAACAATCCTGTGCTAATTGGTAAACCTGGTGTTGGAA
AAACTGCAATTTCTGAAGGGCTGGCTCAGAGAATTGTGCAAGGGGATGTT
CCACAGGCCCTAATGAACCGCAAGCTGATATCTCTTGACATGGGTGCACT
CATTGCTGGAGCAAAATATCGTGGAGAGTTT
back to top