CX053797

Overview
NameCX053797
Unique NameCX053797
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053797 vs. ExPASy Swiss-Prot
Match: PSB1_PETHY (Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.017e-80
Identity = 145/160 (90.62%), Postives = 153/160 (95.62%), Query Frame = -3
Query:  344 QADVKALQKLFAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 823
            QADV+ALQK+ A+RHLIYQHQHNKQMSCP M QLLSNTLYYKRFFPYYSFNVLGGLD+EGKGCV+TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEA+DLVKTCFASATERDIYTGD+LEIV+LN  GI RE MELRKD
Sbjct:   64 QADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAIDLVKTCFASATERDIYTGDRLEIVILNASGIRREEMELRKD 223          
BLAST of CX053797 vs. ExPASy Swiss-Prot
Match: PSB1_ARATH (Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 1.423e-74
Identity = 136/160 (85.00%), Postives = 146/160 (91.25%), Query Frame = -3
Query:  344 QADVKALQKLFAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 823
            QADVKALQK+  +RHLIYQHQHNKQMSCP MAQLLSNTLY+KRFFPYY+FNVLGGLD EGKGCV+TYDAVGSYERVGY +QGSGSTLIMPFLDNQLKSPSPLLLP QD+ TPLSEAEAVDLVKT FASATERDIYTGDKLEI++L   GI  E M+LRKD
Sbjct:   64 QADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVKTVFASATERDIYTGDKLEIMILKADGIKTELMDLRKD 223          
BLAST of CX053797 vs. ExPASy Swiss-Prot
Match: PSB1_ORYSJ (Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.573e-73
Identity = 133/160 (83.12%), Postives = 145/160 (90.62%), Query Frame = -3
Query:  344 QADVKALQKLFAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 823
            Q D+KAL K  AAR L+YQHQHNK+MSCP MAQLLSNTLYYKRFFPYY+FNVLGGLD+EGKGCV+TYDAVGSYER GYS+QG+GS LIMP LDNQLKSPSPLLLPA+DAVTPLSE EAVDLVK  FASATERDIYTGDKLEIVV+NK G  REY++LRKD
Sbjct:   62 QGDIKALHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTYDAVGSYERTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFASATERDIYTGDKLEIVVINKAGTKREYIDLRKD 221          
BLAST of CX053797 vs. ExPASy Swiss-Prot
Match: PSB1_DICDI (Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.258e-38
Identity = 82/160 (51.25%), Postives = 109/160 (68.12%), Query Frame = -3
Query:  344 QADVKALQKLFAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 823
            QAD  ALQK   +    ++ +H K MS P +AQ LSNTLYYKRFFPYY+FN++ G+D +G+G ++TYDAVGS+ERV YSSQGSG+ L++P LDNQ+   +  ++     V   S  + V  VK    SA ERDIYTGD  +IVV++K G+H E  EL+ D
Sbjct:   80 QADTIALQKRLKSMLESFEKEHGKPMSTPAIAQFLSNTLYYKRFFPYYTFNLVAGVDEQGEGWIWTYDAVGSHERVKYSSQGSGNQLVIPLLDNQVAKFNQQIVEGNKDV---SCEQVVSFVKDSITSAGERDIYTGDFADIVVVDKNGVHWEKFELKLD 236          
BLAST of CX053797 vs. ExPASy Swiss-Prot
Match: PSB1B_CARAU (Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.461e-35
Identity = 74/158 (46.84%), Postives = 101/158 (63.92%), Query Frame = -3
Query:  344 DVKALQKLFAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 817
            D   L K+  AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++GGLD EG+G VY++D VGSY+R  Y + GS S ++ P LDNQ+   +           PLS+ +AV LVK  F SA ERD+YTGD L+I ++ K GI  E + LRKD
Sbjct:   84 DCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 237          
BLAST of CX053797 vs. ExPASy Swiss-Prot
Match: PSB1A_CARAU (Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.461e-35
Identity = 74/158 (46.84%), Postives = 101/158 (63.92%), Query Frame = -3
Query:  344 DVKALQKLFAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 817
            D   L K+  AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++GGLD EG+G VY++D VGSY+R  Y + GS S ++ P LDNQ+   +           PLS+ +AV LVK  F SA ERD+YTGD L+I ++ K GI  E + LRKD
Sbjct:   85 DCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 238          
BLAST of CX053797 vs. ExPASy Swiss-Prot
Match: PSB1_HUMAN (Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.715e-33
Identity = 73/158 (46.20%), Postives = 99/158 (62.66%), Query Frame = -3
Query:  344 DVKALQKLFAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 817
            D   L K+  AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PLS   A+ LVK  F SA ERD+YTGD L I ++ K GI  E + LRKD
Sbjct:   88 DCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 241          
BLAST of CX053797 vs. ExPASy Swiss-Prot
Match: PSB1_BOVIN (Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.047e-33
Identity = 72/158 (45.57%), Postives = 100/158 (63.29%), Query Frame = -3
Query:  344 DVKALQKLFAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 817
            D   L K+  AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PLS   A+ LVK  F SA ERD+YTGD L++ ++ K GI  E + LRKD
Sbjct:   88 DCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKDVFISAAERDVYTGDALKVCIVTKEGIRGETVPLRKD 241          
BLAST of CX053797 vs. ExPASy Swiss-Prot
Match: PSB1_MOUSE (Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.898e-33
Identity = 72/158 (45.57%), Postives = 99/158 (62.66%), Query Frame = -3
Query:  344 DVKALQKLFAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 817
            D   L K+  AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PL+   A+ LVK  F SA ERD+YTGD L I ++ K GI  E + LRKD
Sbjct:   87 DCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240          
BLAST of CX053797 vs. ExPASy Swiss-Prot
Match: PSB1_RAT (Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 6.686e-32
Identity = 71/158 (44.94%), Postives = 98/158 (62.03%), Query Frame = -3
Query:  344 DVKALQKLFAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 817
            D   L K+  AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++ GLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PL+   A+ LVK  F SA ERD+YTGD L I ++ K GI  E + LRKD
Sbjct:   87 DCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240          
The following BLAST results are available for this feature:
BLAST of CX053797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PSB1_PETHY1.017e-8090.63Proteasome subunit beta type-1 OS=Petunia hybrida ... [more]
PSB1_ARATH1.423e-7485.00Proteasome subunit beta type-1 OS=Arabidopsis thal... [more]
PSB1_ORYSJ1.573e-7383.13Proteasome subunit beta type-1 OS=Oryza sativa sub... [more]
PSB1_DICDI1.258e-3851.25Proteasome subunit beta type-1 OS=Dictyostelium di... [more]
PSB1B_CARAU6.461e-3546.84Proteasome subunit beta type-1-B OS=Carassius aura... [more]
PSB1A_CARAU6.461e-3546.84Proteasome subunit beta type-1-A OS=Carassius aura... [more]
PSB1_HUMAN2.715e-3346.20Proteasome subunit beta type-1 OS=Homo sapiens GN=... [more]
PSB1_BOVIN6.047e-3345.57Proteasome subunit beta type-1 OS=Bos taurus GN=PS... [more]
PSB1_MOUSE7.898e-3345.57Proteasome subunit beta type-1 OS=Mus musculus GN=... [more]
PSB1_RAT6.686e-3244.94Proteasome subunit beta type-1 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_8C05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-8C05-E9-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053797 ID=CX053797; Name=CX053797; organism=Citrus sinensis; type=EST; length=825bp
CCTGAAACTTGCAATCCTTAACTGAAACTGGAGCGCTGCTATCATTTGTT
GAAATACAGAGCAAATATAACATCAAAATATAGATGCACACCAGATGTAA
TTTGAATACCAAATATACAATTTATCCTCAACGACAATAACACCAGATCT
AATGTTAGAGTAGAAGAAACTAATCTCTCCTATTGGCATCATCACCGCAA
CATATCCACTAGCAAGGAAAGACATATCAAACTGGATTCATATCAAAATG
TGAAACCATGACAACATAAGAACACTGAAATTTTGCTCATGGCAGCTCCA
CCCACTTCAGCTTGACGAGCGTGGCATGATGCCAAAGAGATTAATCCTTC
CTCAGTTCCATGTATTCACGATGAATACCACCTTTGTTTAGGACAACAAT
TTCAAGTTTGTCTCCCGTGTATATGTCTCTCTCAGTTGCTGATGCAAAAC
AAGTTTTGACCAAATCAACTGCTTCAGCCTCTGAAAGAGGAGTAACAGCA
TCCTGGGCAGGCAGTAGGAGAGGACTGGGAGACTTTAGTTGGTTATCCAG
GAATGGCATGATGAGCGTGGACCCAGAACCTTGGGAGCTATATCCAACCC
TCTCATAGGAACCAACAGCATCATATGTGTAGACACAACCCTTCCCTTCA
TTGTCAAGCCCACCCAAGACATTAAATGAATAGTAAGGAAAGAAACGCTT
GTAGTACAGGGTGTTGGAGAGTAGTTGAGCCATTCCAGGGCAGCTCATTT
GCTTGTTGTGCTGATGCTGATAGATCAAGTGCCTTGCTGCAAAGAGTTTT
TGTAAGGCTTTCACATCAGCTTGAA
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